Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2596g00002 ATGCTTCTCAAATGTTTGGGTTTTTGCCGCTCAGAGCATACAAGTGCATCTCGGAGACAGAGACAGTATCCAACAGTAATAGAGGAGCTGTGCCATCAATTTTCCCTGGATGATCTTAGGAAATCAACTAACAACTTTGATGAAAACAAAATACTTGGACGTGGAGACTATTGTACAGTATATAAAGGTTGTCTCCAACATAATGGTGCTACAGATTATACAGTGGCCTTAAAGCGAATGTGTGAGGGTACTGGCCCAGTGTGCCAACAGTTCAAGAAGGAAATAGAGTTGCTCTGCCAGCTTCATCACCCTAATTTGATGCCTCTTATAGGATTCTGCAATAACAAAGATGAGAAGATTATTGTGTACGACTACATGCCCAATGGATCTTTCGATGATCGTCTTCGTCAACGCAATGGGGACAAGATACCACTCTCATGGAAGAAAAGGCTAGAGATATGCATAGGAATATCAAGTGGGGTACACTACCTTCACACGGGAGCCAAACGCACCATAATTCACCGTGACATAAAACCTAGTAACATCCTTTTGGACAGCAATATGATTCCCAAACTCACATATTTCAGCCTTTACTTACAAGGACCACTTTTTTCCTCAAAGCCAAAACTTATTAAAACTGAACAAGTTGCAGGTACAATTGGTTTCTTAGCTCCTGAGAATTTCAGCAAACCTATGCCCGACTTGACAGATAGAAGTGATGTTTATTCCTTTGGTGCGTTTCTGTTAGAAGTGGTTTGCAGAGAGTCATATACTAAAATTTTAAGGGAGATGAGAGAGCTCCCAAGTGAAGAATTAGATATGCCTATAATTTCAGATGGTGCACGTGTTCCTAACATAATGCAAGGGCTCACAGTTGAGCAGATTATTGATCCCACTATTGCGGGAAAAATAGCACCAGATTGTTGGGAAGTGTTTATAGATATCATAGACAGATGCTTGAAGCATGAACCAAGTGAACGACCAGCTATGGGCGAAGTAGAGGTGGAACTTGAGCATGCTCTGTCATTGCAACAGGAAGCTGATGCCAACAACACTAGTGGCGAGTATAGCTTCTTATCGACCAGCATTACTCAACCTCAACAATTACAAGAGGAGGCGCCAATTTCAGCATAG 1134 0.4171 MLLKCLGFCRSEHTSASRRQRQYPTVIEELCHQFSLDDLRKSTNNFDENKILGRGDYCTVYKGCLQHNGATDYTVALKRMCEGTGPVCQQFKKEIELLCQLHHPNLMPLIGFCNNKDEKIIVYDYMPNGSFDDRLRQRNGDKIPLSWKKRLEICIGISSGVHYLHTGAKRTIIHRDIKPSNILLDSNMIPKLTYFSLYLQGPLFSSKPKLIKTEQVAGTIGFLAPENFSKPMPDLTDRSDVYSFGAFLLEVVCRESYTKILREMRELPSEELDMPIISDGARVPNIMQGLTVEQIIDPTIAGKIAPDCWEVFIDIIDRCLKHEPSERPAMGEVEVELEHALSLQQEADANNTSGEYSFLSTSITQPQQLQEEAPISA 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2596g00002 377 SMART serkin_6 46 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2596g00002 377 SUPERFAMILY Protein kinase-like (PK-like) 21 336 IPR011009 -
Gabi2596g00002 377 ProSiteProfiles Protein kinase domain profile. 46 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2596g00002 377 Gene3D Transferase(Phosphotransferase) domain 1 126 362 - -
Gabi2596g00002 377 Gene3D Phosphorylase Kinase; domain 1 7 125 - -
Gabi2596g00002 377 FunFam Receptor-like protein kinase ANXUR2 6 125 - -
Gabi2596g00002 377 PANTHER OS07G0166700 PROTEIN 30 344 IPR045272 GO:0004714|GO:0006468
Gabi2596g00002 377 ProSitePatterns Serine/Threonine protein kinases active-site signature. 172 184 IPR008271 GO:0004672|GO:0006468
Gabi2596g00002 377 MobiDBLite consensus disorder prediction 354 377 - -
Gabi2596g00002 377 Pfam Protein tyrosine and serine/threonine kinase 49 335 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2596g00002 Gabi-Chr2596 8209 10249 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2596g00002 13 355 Receptor kinase-like Gene Family AT5G38990 39.826 3.58e-72 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Gabi2596g00002 PK_Tyr_Ser-Thr 8.9e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2596g00002 - - adu:107486597 404.831