Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2592g00004 ATGGCTGGTTTGATGCATATGTCTGTGTATGTTGTCACTTTTGATGTTCCAACATTGGTCATTGTTTGTAGCGTTGTCACACTGATCTTCTTCATCTTCTATCAAATTTTCTATGGTTTATTCTATTGGTTCATGGAAATGAGGCCTAATGAATTGCATGATCTTGAAGAAGGAACTCATCTAGCTTCTTATGGTGCATCTGGGTCATCTCAACGTGTTACAATCTTTCATGCTCTTGTCCTTGGCAATTTGCAGGCTTGGACGATGGTGGCTGCATTGGAAGGAGATTTTGATGAGAATAGAGGGCAAAAGCTTAGAGCTTCTAAGAAATTGCCTCCATTGGTGAACTATGGAAAGCATGAGGCAATAAGAAGTTGTAATGAGTGTGCAATTTGCTTGGAAGATTTCGATGTTGATCAGTTCTGTCAAGTTTTTCCTGTGTGCAAACACATTTTTCATTCAGATTGCATTGACCACTGGTTGCAGAAGAAATTAACATGTCCAATATGTCGTAGTAGATGCATACAAGATTAG 534 0.3895 MAGLMHMSVYVVTFDVPTLVIVCSVVTLIFFIFYQIFYGLFYWFMEMRPNELHDLEEGTHLASYGASGSSQRVTIFHALVLGNLQAWTMVAALEGDFDENRGQKLRASKKLPPLVNYGKHEAIRSCNECAICLEDFDVDQFCQVFPVCKHIFHSDCIDHWLQKKLTCPICRSRCIQD 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2592g00004 177 ProSiteProfiles Zinc finger RING-type profile. 129 171 IPR001841 -
Gabi2592g00004 177 CDD RING-H2_PA-TM-RING 128 171 - -
Gabi2592g00004 177 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 175 IPR013083 -
Gabi2592g00004 177 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 17 173 IPR044675 -
Gabi2592g00004 177 Pfam Ring finger domain 127 171 IPR001841 -
Gabi2592g00004 177 SUPERFAMILY RING/U-box 128 175 - -
Gabi2592g00004 177 SMART ring_2 129 170 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2592g00004 Gabi-Chr2592 79831 80364 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2592g00004 19 172 C3H Transcription Factor Family AT1G53010 31.902 6.02e-18 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2592g00004 - - gmx:102660073 262.307