Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2588g00004 ATGGGGCTAGACAATAATGGGGTGATCCCATCTAGCTCAATCTGGAGAAAAGCTAGATTTGGTGAAGGTGTGATTATAGGAAACCTCGATACAGGAGTTTGGCCTGAATCCAAGAGCTTTAGTGATGAAGGGTTGGGACCAATTCCATCAAAGTGGAGAGGAATCTGTGATAACGGAACTGATCCTGGTTTTCACTGCAACAGGAAGCTAATTGGGGCAAGGTATTTCAACAAGGGCTATGCTTCTATTGCTGGCCCACTCAACTCTTCATTTGACTCACCGCGTGACAACGATGGGCATGGATCCCACACTCTATCAACTGCTGGTGGTAACATGGTAAGTGGGGTCAGTGTCTTTGGTCAAGGAAATGGAACAGCAAAGGGTGGGTCCCCTAAAGCCAGGGTGGCATCTTATAAGGTTTGCTGGCCCCCTATTGGTGTTGATGAATGCTTTGAAGCTGATATACTAGCAGGTTTTGATATGGCCATCCATGATGGTGTTGATGTTTTGTCTGTGTCATTGGGTGGCTCTTCCTCTACCCTTTTTAAAGATAGTATTGCCATTGGATCCTTCCATGCTGCTAAGCATGGCATTGTTGTGGTTTGTTCTGTTGGCAATAGTGGACCTGCTGATGCTTCTGCAGCGAATCTTGCTCCATGGTATATCACAGTTGGTGCCAGCACAATGGATAGAGAGTTCCCTAGTTATGTTGTCCTTGGTAACAAGATAAGCTTGAAGGGAGAAAGCTTGTCAGCTGCAAGATTGGCACACAAGTCCTACCCAATTATTAAAGCTACAGATGCTAAATTGGCCAGTGCAACAGCTCAAGATGCTGTGCTGTGCCAGAATGGAACTCTGGATCCCAAAAAGGTGAAGGGAAAGATTGTAGTATGCCTCAGAGGGATAAATGCAAGAGTGGACAAAGGAGAGCAAGCTTTGCTAGCTGGTGCTGCAGGAATGGTTCTTGCCAATGATGTGACCAATGGGAATGAAATTTTAGCTGATCCTCATGTCCTTCCAGCTTCTCAGATCAATTTCACTGATGGTGTTGCTCTCTATAAGTACATCAACTCAACTAAGTACCCTATGGCTTATATTACACATCCAAAGACACTATTGCATACTAAGCCAGCCCCCTTCATGGCAGCGTTTTCATCAAAAGGACCAAATACTATTGTACCAGAGATCCTAAAGCCTGATATCACTGCCCCAGGAGTGTCAGTTATAGCGGCCTACACAGAAGCTGAAGGGCCAACTAATCAATATTTCGACAAGCGTAGGATTCCATTTAACTCAATCTCAGGCACATCAATGTCATGCCCTCATATTTCAGGAATTGTGGGCCTTTTGAAAACTCTATATCCTTCGTGGAGTCCTGCTGCTATTAAATCAGCAATCATGACCACAGCTACAACACTAGATAATGAGTCAGAGACCCTGCTGAATGCTACTAATGGCCAAGCAACACCATTTAGTTATGGGGCAGGACATGTTCAACCAAATAGAGCAATGGATCCTGGCCTAGTTTATGACACAACAATTGATGATTACCTAAACTTCTTATGTGCTTTAGGTTACAATGCAACACTAATATCAGTGTTTTCAGATAGTCCTTATCCATGCCACAAGAACTTTAGTCTCCTCAACCTAAACTATCCTTCAATCACAGTCCCAAATCTATCTGGGTCAGTCAAAGTAAAAAGGACATTAAAAAATGTTGGTTCTCCTGCAACATACATTGCTCATGTTCAAAACCCAAGTGGAATCACCATTTCTGTGGAGCCAAACATCTTGAAGTTCAAAAAAGTTGGTGAAGAAAAGAGATTTGAAGTAACCTTGAAGGTTAATAAAGGAAAAGCATCAAATAACTATGTGTTTGGAAAGCTGATATGGTCAGATGGCAAGCATTATGTTAGGAGTCCAATTGTGGTGAAGACCCTCTAG 1944 0.4316 MGLDNNGVIPSSSIWRKARFGEGVIIGNLDTGVWPESKSFSDEGLGPIPSKWRGICDNGTDPGFHCNRKLIGARYFNKGYASIAGPLNSSFDSPRDNDGHGSHTLSTAGGNMVSGVSVFGQGNGTAKGGSPKARVASYKVCWPPIGVDECFEADILAGFDMAIHDGVDVLSVSLGGSSSTLFKDSIAIGSFHAAKHGIVVVCSVGNSGPADASAANLAPWYITVGASTMDREFPSYVVLGNKISLKGESLSAARLAHKSYPIIKATDAKLASATAQDAVLCQNGTLDPKKVKGKIVVCLRGINARVDKGEQALLAGAAGMVLANDVTNGNEILADPHVLPASQINFTDGVALYKYINSTKYPMAYITHPKTLLHTKPAPFMAAFSSKGPNTIVPEILKPDITAPGVSVIAAYTEAEGPTNQYFDKRRIPFNSISGTSMSCPHISGIVGLLKTLYPSWSPAAIKSAIMTTATTLDNESETLLNATNGQATPFSYGAGHVQPNRAMDPGLVYDTTIDDYLNFLCALGYNATLISVFSDSPYPCHKNFSLLNLNYPSITVPNLSGSVKVKRTLKNVGSPATYIAHVQNPSGITISVEPNILKFKKVGEEKRFEVTLKVNKGKASNNYVFGKLIWSDGKHYVRSPIVVKTL 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2588g00004 647 CDD PA_subtilisin_like 236 366 - -
Gabi2588g00004 647 SUPERFAMILY PA domain 277 361 IPR046450 -
Gabi2588g00004 647 Gene3D - 230 373 - -
Gabi2588g00004 647 FunFam Subtilisin-like protease SBT1.5 23 282 - -
Gabi2588g00004 647 Pfam Fibronectin type-III domain 549 644 IPR041469 -
Gabi2588g00004 647 SUPERFAMILY Subtilisin-like 10 508 IPR036852 GO:0004252|GO:0006508
Gabi2588g00004 647 Gene3D Peptidase S8/S53 domain 23 517 IPR036852 GO:0004252|GO:0006508
Gabi2588g00004 647 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 13 644 IPR045051 -
Gabi2588g00004 647 Pfam Subtilase family 21 495 IPR000209 GO:0006508|GO:0008236
Gabi2588g00004 647 CDD Peptidases_S8_3 1 471 IPR034197 -
Gabi2588g00004 647 ProSitePatterns Serine proteases, subtilase family, serine active site. 435 445 IPR023828 -
Gabi2588g00004 647 Pfam PA domain 281 352 IPR003137 -
Gabi2588g00004 647 FunFam subtilisin-like protease SBT1.5 230 373 - -
Gabi2588g00004 647 Gene3D - 521 647 - -
Gabi2588g00004 647 PRINTS Subtilisin serine protease family (S8) signature 96 109 IPR015500 -
Gabi2588g00004 647 PRINTS Subtilisin serine protease family (S8) signature 434 450 IPR015500 -
Gabi2588g00004 647 PRINTS Subtilisin serine protease family (S8) signature 21 40 IPR015500 -
Gabi2588g00004 647 FunFam Subtilisin-like protease SBT1.5 521 647 - -
Gabi2588g00004 647 ProSiteProfiles Serine proteases, subtilase domain profile. 1 504 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2588g00004 Gabi-Chr2588 55617 66195 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2588g00004 1 645 Subtilisin-like Serine Gene Family AT2G04160 66.821 0.0 887
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2588g00004 - - gmx:100794807 1111.29