Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2588g00001 ATGAAGAGGCCTATGTCGATGGGATCCTTAGAGGGAAGAACTGTGATAGAACTTGAAGAAGCCAGCCTACTTAATCCTTCTTCATTTCCTAGAAAAAATCTATCCTTTGAAGAGGATTCACCAATTGATCAGGACTGTGAGAAGTTCTCACAAGATGTAATCAGAAGTAAGGTGCTAAGTAGCATTAAAGTGGTAGTCCTCTCCACCAAGATAACCTTACTCATGCCTTTTGGCCCCATGGCAATTTTGGTAGACAAATTGTTTGATAGTCATGGTTTGGTCTTTCTTTTCAGCTTATTAGGCATTATACCCTTGGCAGAGCGTTTAGGCTATACAACAGAGCAACTAGCTTTCTTCACTGGACCTGCAGTTGGTGGTCTTTTATATGCCACATTTGGAAATGCAACAGAGTTAATTATCTCAATTCACGCCCTCAAAAGTGGCTTAATTCGTCTTGTTCAACAATCACTACTAGGCTCAATTTTGTCGAACCTGTTGTTACAGAAATTGACCTTCTGTAATCATCAGGCAGATGCTCCTGTGGATTTTGGATTACTATTGATGGCAGTAATGGGCCTGTTACTTCCAGCTGTCCTCCAAGCTACAAACACAGAATTAGAACATGAGAAATCTGAGTTAACTCTTTCAAGATTTACTAGTTGCATTATGCTTCTGGCTTATGCTTCCTATATAGTGTTTCAAGTGAAGAGTCAGAAGAATTTACAAGTCCCAGTTCATGAGGATACGGGTCTCAATGAAGAGACTTCAGATGATGCAGAAGCTCCTGAGATTTCTATGAGGGAATCAATGATATGGCTGTCAATCTTAACAGGAGGTATATCGGTCCTGTCAGAATACTTGGTTAACACTATAGAGGGGGCATCGAAAGAGTTTAAAATGCCTGTGGCATTTCTTAGTGTTATTCTTCTCCCTGTAGTTGGGAATGCTGCAGAACATGTTGGAGCAATCGTGTTTGCTGTCAAAGACAAACTCGACATATCTATGGGAGTAGCTGTAGGGTCTTCAATACAAATATCAATGTTCGTGATTCCTTTTTGTGTGGTTGTTGGATGGATGATTGAGTGCCCTATGGACTTGAATTTTCAACCTTTCGAGACAACTTCCCTTTTCATGACTGTTATCATAGTTGCCTTCATGTTGCACAATGGAACTTCGAACTACTTCAAAGGAATAATGCTCATTCTTTGCTATTTGATAGTTTCTGCAAGTTTTTTTGTACATACTGATCCTATATCAGTTGGTTCTGTTGTACCACTTCTAAAATTGGAAGTCGCAACTTGA 1302 0.3978 MKRPMSMGSLEGRTVIELEEASLLNPSSFPRKNLSFEEDSPIDQDCEKFSQDVIRSKVLSSIKVVVLSTKITLLMPFGPMAILVDKLFDSHGLVFLFSLLGIIPLAERLGYTTEQLAFFTGPAVGGLLYATFGNATELIISIHALKSGLIRLVQQSLLGSILSNLLLQKLTFCNHQADAPVDFGLLLMAVMGLLLPAVLQATNTELEHEKSELTLSRFTSCIMLLAYASYIVFQVKSQKNLQVPVHEDTGLNEETSDDAEAPEISMRESMIWLSILTGGISVLSEYLVNTIEGASKEFKMPVAFLSVILLPVVGNAAEHVGAIVFAVKDKLDISMGVAVGSSIQISMFVIPFCVVVGWMIECPMDLNFQPFETTSLFMTVIIVAFMLHNGTSNYFKGIMLILCYLIVSASFFVHTDPISVGSVVPLLKLEVAT 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2588g00001 433 Gene3D - 122 413 IPR044880 -
Gabi2588g00001 433 Pfam Sodium/calcium exchanger protein 272 408 IPR004837 GO:0016020|GO:0055085
Gabi2588g00001 433 Pfam Sodium/calcium exchanger protein 93 235 IPR004837 GO:0016020|GO:0055085
Gabi2588g00001 433 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 53 417 IPR004713 GO:0006812|GO:0008324|GO:0016020
Gabi2588g00001 433 NCBIfam calcium/proton exchanger 58 412 - -
Gabi2588g00001 433 FunFam Vacuolar cation/proton exchanger 257 413 - -
Gabi2588g00001 433 NCBIfam calcium/proton exchanger 75 412 IPR004798 GO:0006816|GO:0015369
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2588g00001 Gabi-Chr2588 20855 28178 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2588g00001 15 417 Antiporters AT1G55730 60.526 7.42e-171 484
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2588g00001 K07300 - jre:109000743 509.22