Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi257g00004 ATGAGCAAAATAGAGGGACCAAAGGAGATAATAAGGAAGGTTGATTTGGTTATAATTGTAGTATTGATCAGCTTCATTGTGGGGCCAGGACTAGTTTCATGTCAGAACAAAGGTTCTGGTGGTGCTGGGGTTGAGATATTCGCCCAGCAAATTTACCGTAGCATGTCCAATTATACAACTGTTTTCAAAGCTGCAATAAAAAAAGAGTTGGGTTATTGCATACTTGATGTGGACTCTGATTGGGATGGGGCGTTCAATTTCACCAAAGATCTGAGCTTTTTGACCATTTGTGCCCAGCAAATGAAAGGAGATATTACACAACGCGTGTGCACAGCAGGAGAAATAGAAGCCTATGCCAGAAGTTTTGCTACCAGCACCAAATCCAACTTTTTGAAGCCCAACATAAACTGTAATTTGAGCTCATGGGTTAATGGATGTGAACCTGGATGGGGATGTAAAGCTAATCAGAAAGTAGACCTTAACAGTAACAAAAAGGAGATACCTGTTAGATCTGTTGAATGTCAACCTTGTTGTGAAGGTTTCTTTTGCCCTCATGGTATCACCTGCATGATTCCTTGTCCATTGGGGTCTTACTGTCCACGTGCGGAGCTCAATAAAACTAGTGGAATATGTGAACCATATCGTTATCAGCTACCTCCTGGAAAGGCTAACCATACTTGTGGGGGAGCAGATATTTGGGCAGACATTATGAGTAGTGGTGAGGTATTCTGTTCAGCAGGATCATACTGTCCATCTACAATCATAAAAAATCCTTGCAAAGAGGGGTATTACTGCAGAACAGGTTCTACTGCACAAGAGCGGTGTTTCAGGTTGGCAACTTGTGAGCCTAAATCAGCAAATCAGAATATTACTGCATATGGTGTCCTGGTTTTTGCTGGCTTGTGTTTCATGCTTATTATCATATATAACTGTTCTGATCAAGTTCTTGCAACTCGAGAAAGAAGACAAGCAAAATCAAGAGAAAGGGCTGCACAAAGTGTAAGAGAAACACAAGCACGTGAAAAATGGAAATCTGCAAAAGATATTGCTAAGAAGCATGCAGTAGGATTGCAATCACAATTATCGCGTACTTTTTCGCGCAAAAAAACTTCAAATAAGTCAGATTTCAAAGGTGTCTTACCACCTATGGCACCAGGAGGTGCTGGTACATCAAAAGGAAAGAAAAAGGATAAAAGCAACCTCACAAAAATAATAAATGACATTGAGGAAGACCCTGACAGTCAAGAAGGGTTTAATCTACAGATAGGAGATAAAAATGTCAAAAAGCAAGCACCAAGGGGTAAGGCATTGCATACTCAGAGCCAAATTTTCAAGTATGCATATGGTCAGATTGAGAAAGAAAAGGCTTTACAGGAACAAAATAAAAACTTGACCTTCTCTGGAGTGATTTCAATGGCCAGTGATATTGAGATAAGGAAGAGACCTACCATTGAGGTTGCTTTCAAAGATTTAACCCTCACTTTGAAAGGGAAAAACAAACATCTATTAAGAAGTGTGACTGGTAAAATATATCCTGGCAGAGTTTCAGCAGTTATGGGCCCTTCTGGGGCTGGTAAGACAACATTTCTTTCTGCTTTAACTGGAAAAGCAACTGGATGTAACACAACTGGGCAAGTTTTTGTAAATGGCCAGGAATCATCTATTCGGTCATACAAGAAGATAATTGGTTTTGTGCCACAAGATGATATTGTGCATGGCAATTTGACTGTGGAGGAGAATCTGTGGTTCAGTGCCAGATGCAGACTCTCTGCTGATCTACCGAAAGAAGAGAAGGTGTTAGTGGTTGAAAGAGTCATTGAGTCCTTGGGTCTGCAGGCAATAAGGGATTCTCTGGTTGGGACAGTGGAGAAGCGAGGAATCTCTGGAGGTCAAAGGAAAAGAGTAAACGTAGGACTGGAAATGGTTATGGAACCTTCCCTTCTAATTTTGGATGAACCCACATCTGGTTTGGACAGCTCATCTTCTCAGTTACTGCTTAAAGCACTTAGACGTGAGGCTCTTGAAGGAGTAAACATATGTATGGTCCTTCACCAACCGAGTTACACCTTGTTCAAGATGTTTGATGATTTTATACTGCTTGCAAAAGGAGGTCTTACAGTGTATCATGGACCCGTGAACAAAGTGGAAGAGTACTTTTCAAGCTTGGGGATTGTTGTCCCTGACCGTGTCAACCCTCCAGATTACTACATTGACATTTTAGAAGGAATATTAAAACCAAGTGCAAGCTCAGGAGTAAACTACAAACAACTACCAGTTAGATGGATGCTTCATAATGGTTACCCGGTGCCTATGGATATGCTACAGAGTGTTGAGGGATTAGCCGCCACAAGTGGTGAAGGTTCAGCACATGGAGCAGCCATGCCTGAACAGAATGCTGATGCACCTTCCTTTGCTGGAGAACTTTGGCAGGATGTAAAGTACACCGTTGAGTTGAAGAGGGACAACCTTCAACACAACTTCCTAAATTCAAATGATTTGTCCAATCGGTTGACACCAGGAGCGTTCCAACAATACAAATACTTTCTTGGAAGAGTTGGAAAGCAGCGACTACGAGAAGCTAGAACACAATTTGTAGATTTTCTGATTTTGCTGATAGCTGGCCTCTGCTTAGGAACACTTGCCAAAGTGAGTGATGAATCGTTTGGAGCAACCGGCTATACATACACTGTAATAGCAGTATCACTCCTTTCCAAGATTGCGGCTCTGAGATCATTCGCATTGGATAAGTTGCACTACTGGAGGGAAAGTGCTTCTGGCATGAGTAGCCTGGCTTACTTTCTTTCAAAGGATACGGTTGACCATTTCAGTACAATTGTCAAACCTTTGGTTTATCTCTCTATGTTCTATTTCTTCAACAATCCAAGATCATCTGTCATAGATAACTACATTGTTTTGCTATGTTTGGTGTATTGTGTCACTGGCATAGCTTATGTGTTGGCAATCTTCTTTCAACCAGGTCCAGCCCAACTGTGGTCAGTGTTACTTCCAGTAGTTTTGACTCTCGTAGCAACCTATGATAATGAAGAAGATAGCAAATATATTCGTTTTCTATCTGACCTGTGCTACACCAAGTGGGCTCTTGAAGCATTTGTAATATCTAATGCACAAAGATATGCAGGAGTTTGGTTAATAAGTCGATGTGGTGCACTCCATTCCTATGGCTATGATCTCAAACATTGGTATCAATGTTTAGGCCTTCTTATTGTAACAGGAATAATTAGTCGCATGCTTGCATTTTTTTGTATGATAACCTTCCAGAAGAAGTAG 3288 0.4115 MSKIEGPKEIIRKVDLVIIVVLISFIVGPGLVSCQNKGSGGAGVEIFAQQIYRSMSNYTTVFKAAIKKELGYCILDVDSDWDGAFNFTKDLSFLTICAQQMKGDITQRVCTAGEIEAYARSFATSTKSNFLKPNINCNLSSWVNGCEPGWGCKANQKVDLNSNKKEIPVRSVECQPCCEGFFCPHGITCMIPCPLGSYCPRAELNKTSGICEPYRYQLPPGKANHTCGGADIWADIMSSGEVFCSAGSYCPSTIIKNPCKEGYYCRTGSTAQERCFRLATCEPKSANQNITAYGVLVFAGLCFMLIIIYNCSDQVLATRERRQAKSRERAAQSVRETQAREKWKSAKDIAKKHAVGLQSQLSRTFSRKKTSNKSDFKGVLPPMAPGGAGTSKGKKKDKSNLTKIINDIEEDPDSQEGFNLQIGDKNVKKQAPRGKALHTQSQIFKYAYGQIEKEKALQEQNKNLTFSGVISMASDIEIRKRPTIEVAFKDLTLTLKGKNKHLLRSVTGKIYPGRVSAVMGPSGAGKTTFLSALTGKATGCNTTGQVFVNGQESSIRSYKKIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKEEKVLVVERVIESLGLQAIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLKALRREALEGVNICMVLHQPSYTLFKMFDDFILLAKGGLTVYHGPVNKVEEYFSSLGIVVPDRVNPPDYYIDILEGILKPSASSGVNYKQLPVRWMLHNGYPVPMDMLQSVEGLAATSGEGSAHGAAMPEQNADAPSFAGELWQDVKYTVELKRDNLQHNFLNSNDLSNRLTPGAFQQYKYFLGRVGKQRLREARTQFVDFLILLIAGLCLGTLAKVSDESFGATGYTYTVIAVSLLSKIAALRSFALDKLHYWRESASGMSSLAYFLSKDTVDHFSTIVKPLVYLSMFYFFNNPRSSVIDNYIVLLCLVYCVTGIAYVLAIFFQPGPAQLWSVLLPVVLTLVATYDNEEDSKYIRFLSDLCYTKWALEAFVISNAQRYAGVWLISRCGALHSYGYDLKHWYQCLGLLIVTGIISRMLAFFCMITFQKK 1095
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi257g00004 1095 Gene3D - 475 723 IPR027417 -
Gabi257g00004 1095 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 487 724 IPR027417 -
Gabi257g00004 1095 MobiDBLite consensus disorder prediction 360 399 - -
Gabi257g00004 1095 Pfam ABC transporter 503 655 IPR003439 GO:0005524
Gabi257g00004 1095 ProSitePatterns ABC transporters family signature. 627 641 IPR017871 GO:0005524|GO:0016887
Gabi257g00004 1095 CDD ABCG_EPDR 484 710 - -
Gabi257g00004 1095 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 486 727 IPR003439 GO:0005524
Gabi257g00004 1095 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 248 1082 - -
Gabi257g00004 1095 Pfam ABC-2 type transporter 684 1095 IPR043926 GO:0140359
Gabi257g00004 1095 MobiDBLite consensus disorder prediction 325 346 - -
Gabi257g00004 1095 FunFam ABC transporter G family member 24 480 722 - -
Gabi257g00004 1095 SMART AAA_5 512 713 IPR003593 GO:0016887
Gabi257g00004 1095 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi257g00004 Gabi-Chr257 48488 54433 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi257g00004 513 708 Calmodulin-binding Proteins AT2G36910 28.372 1.88e-11 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi257g00004 - - gmx:100794093 1917.12