Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi257g00003 ATGAAATCTGAGACCTCTTTCCCTCTTAAAGCCATTAACAAAAAACTACCTCCTTTTAAAGCTAAAAAGGATCGCCACGCCAAGGTGAATGGGCGAGAATGTCGCGTTCTCTTGCCATCATTGTGTGCTGCTCGCATCTTCCAACTCACCCATGAGCTAGGCTATAAGACTCATGGCGAGACCATTGGGTGGCTTTTACGCCAAGCTGAGCCTTCCATTATTGCCACCATTGGCACCACAATGTCATCTCCTGTGGACACACCAAATTCCATCGTTGTTGCACCTGCATCAGCTTCAGTCTTGCCATCACCAGCTAAGGACAAAACTACAGGTCAAGATGCAAATTCAGCTGCCATGTTTGAAGGCATAAAGTTTGAGCAAGCATCTCCACCCTTTGAGTTTGATTTGTTTGCAAACTTTGATGTAGAATTTTTTAATAGTGAGATAGCAATGCTCTAA 459 0.4423 MKSETSFPLKAINKKLPPFKAKKDRHAKVNGRECRVLLPSLCAARIFQLTHELGYKTHGETIGWLLRQAEPSIIATIGTTMSSPVDTPNSIVVAPASASVLPSPAKDKTTGQDANSAAMFEGIKFEQASPPFEFDLFANFDVEFFNSEIAML 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi257g00003 152 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 12 109 IPR005333 GO:0003700
Gabi257g00003 152 ProSiteProfiles TCP domain profile. 22 76 IPR017887 -
Gabi257g00003 152 Pfam TCP family transcription factor 21 97 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi257g00003 Gabi-Chr257 41661 42119 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi257g00003 8 99 TCP Transcription Factor Family AT5G08330 55.435 1.87e-24 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Gabi257g00003 TCP 6.2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi257g00003 - K16221 var:108322003 157.918