Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2579g00007 ATGGCTAAACCTATACCAAAAATTGGTTCGCGTAAAAATGGACGTATTGGTTCGCGTAAGCATGCTCGTAAAATACCAAAGGGAGTTATTCATGTTCAAGCTAGTTTCAACAATACCATTGTGACTGTTACAGATGTTCGGGGTCAGGTGATTTCTTGGTCTTCCGCCGGTACTTGTGGATTCAAAGGTACACGGAGGGGAACGCCATTTGCAGCTCAAATCGCAGCAGGAAATGCTATTAGAATGGTAGCGGATCAAGGCATGCAACGAGCAGAAGTCATGATAAAAGGTCCCGGTCTCGGAAGAGATGCGGCATTAAGAGCTATTCGTAGAAGTGGTATAGTCTTAAATTGTATAAGGGATGTAACCCCTATGCCACATAATGGATGTAGATCTCCAAAAAAAAGACGTGTGTAA 417 0.4317 MAKPIPKIGSRKNGRIGSRKHARKIPKGVIHVQASFNNTIVTVTDVRGQVISWSSAGTCGFKGTRRGTPFAAQIAAGNAIRMVADQGMQRAEVMIKGPGLGRDAALRAIRRSGIVLNCIRDVTPMPHNGCRSPKKRRV 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2579g00007 138 NCBIfam 30S ribosomal protein S11 19 135 IPR019981 GO:0003735|GO:0005840|GO:0006412
Gabi2579g00007 138 FunFam 30S ribosomal protein S11, chloroplastic 11 138 - -
Gabi2579g00007 138 PANTHER 40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11 24 136 IPR001971 GO:0003735|GO:0005840|GO:0006412
Gabi2579g00007 138 ProSitePatterns Ribosomal protein S11 signature. 106 128 IPR018102 -
Gabi2579g00007 138 PIRSF RPS11p_RPS11a_RPS14e_RPS11o 7 138 IPR001971 GO:0003735|GO:0005840|GO:0006412
Gabi2579g00007 138 MobiDBLite consensus disorder prediction 1 23 - -
Gabi2579g00007 138 Pfam Ribosomal protein S11 28 137 IPR001971 GO:0003735|GO:0005840|GO:0006412
Gabi2579g00007 138 Hamap 30S ribosomal protein S11 [rpsK]. 11 138 IPR001971 GO:0003735|GO:0005840|GO:0006412
Gabi2579g00007 138 Gene3D Ribosomal protein S11 9 138 IPR036967 GO:0003735|GO:0005840|GO:0006412
Gabi2579g00007 138 SUPERFAMILY Translational machinery components 23 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2579g00007 Gabi-Chr2579 42324 42995 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2579g00007 28 128 Cytoplasmic Ribosomal Protein Gene Family AT3G52580 36.364 3.93e-14 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2579g00007 K02948 - gmx:3989330 256.144