Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2579g00002 ATGGCTTCTCTGCTCTCACCACCCAATTTCGTTTCCCTCACAACCCCACCAACATCAAGTTCCTCAACTCACATCATCTTGAACTTGAGACAGCCCCTTCTCAAGTTGGTGCCTTCCCTAGCTGTTGGAACTCTCACACACCGTTTTCGGAGACCCTTTGCCGTTGTGGCTGAAGAAGTTGCGGTCACCACGCGTGACCCCAACTCCGAGGCTGCAAGGAGGCTCTACGTTGGCAACATTCCTCGCACTGTCACCAACGATGAGCTTGCAAAGATTCTTGAAGAGCATGGTGCCGTTGAGAAAGCACAGGTTATGTATGATAAATACTCTGGAAGGAGCCGTCGCTTTGCATTTGTTACGATGAAAACTGTTGAGGATGCAAATGCAGTAATTGAGAAACTTAATGGCACTGAAATTGGAGGGCGTGAGGTTAAAGTAAACATAACTGAAAAACCTTTGACCACAGTAGATTTACCATTACTCCAGGTTGAGGAATCAGAAAATATTGACAGTCCCCACAAGGTATATGTGGGAAATCTAGCCAAGACAGTAACAACTGATACTCTTAAAAGCTTTTTTTCTGAGAAGGGAAAAGTTCTTAGTGCTAAGGTTTCCCGGGTCCCTGGGACCTCAAAATCCAGTGGGTTTGGTTTTGTTACTTTTTCATCAGCTGAGGATGTAGAAGCTGCAATATCATCTTTCAACAATTCTTTGTTAGAAGCGCAAAAAATTCGTGTGAATAAGGCGTAG 750 0.4467 MASLLSPPNFVSLTTPPTSSSSTHIILNLRQPLLKLVPSLAVGTLTHRFRRPFAVVAEEVAVTTRDPNSEAARRLYVGNIPRTVTNDELAKILEEHGAVEKAQVMYDKYSGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREVKVNITEKPLTTVDLPLLQVEESENIDSPHKVYVGNLAKTVTTDTLKSFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSAEDVEAAISSFNNSLLEAQKIRVNKA 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2579g00002 249 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 173 249 IPR000504 GO:0003723
Gabi2579g00002 249 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 73 151 IPR000504 GO:0003723
Gabi2579g00002 249 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 75 145 IPR000504 GO:0003723
Gabi2579g00002 249 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 175 244 IPR000504 GO:0003723
Gabi2579g00002 249 Gene3D - 161 249 IPR012677 -
Gabi2579g00002 249 MobiDBLite consensus disorder prediction 1 21 - -
Gabi2579g00002 249 Gene3D - 56 154 IPR012677 -
Gabi2579g00002 249 SMART rrm1_1 174 247 IPR000504 GO:0003723
Gabi2579g00002 249 SMART rrm1_1 74 147 IPR000504 GO:0003723
Gabi2579g00002 249 SUPERFAMILY RNA-binding domain, RBD 65 150 IPR035979 GO:0003676
Gabi2579g00002 249 CDD RRM1_PSRP2_like 74 153 - -
Gabi2579g00002 249 PANTHER OS02G0815200 PROTEIN 68 248 - -
Gabi2579g00002 249 FunFam 30S ribosomal protein 2, chloroplastic 160 249 - -
Gabi2579g00002 249 SUPERFAMILY RNA-binding domain, RBD 166 249 IPR035979 GO:0003676
Gabi2579g00002 249 FunFam 30S ribosomal protein 2, chloroplastic 53 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2579g00002 Gabi-Chr2579 21246 30539 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2579g00002 67 246 Eukaryotic Initiation Factors Gene Family AT1G22760 26.111 3.94e-12 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2579g00002 K13126 - gmx:100811197 340.117