Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2579g00001 ATGGCTTCTCTGCTCTCACCACCCAATTTCGTTTCCCTCACAACCCCACCAACATCAAGTTCCTCAACTCACATCATCTTGAACTTGAGACAGCCCCTTCTCAAGTTGGTGCCTTCCCTAGCTGTTGGAACTCTCACACACCGTTTTCGGAGACCCTTTGCCGTTGTGGCTGAAGAAGTTGCGGTCACCACGCGTGACCCCAACTCCGAGGCTGCAAGGAGGCTCTACGTTGGCAACATTCCTCGCACTGTCACCAACGATGAGCTTGCAAAGATTCTTGAAGAGCATGGTGCCGTTGAGAAAGCACAGGTTATGTATGATAAATACTCTGGAAGGAGCCGTCGCTTTGCATTTGTTACGATGAAAACTGTTGAGGATGCAAATGCAGTAATTGAGAAACTTAATGGCACTGTTGAGGAATCAGAAAATATTGACAGTCCCCACAAGGTATATGTGGGAAATCTAGCCAAGACAGTAACAACTGATACTCTTAAAAGCTTTTTTTCTGAGAAGGGAAAAGTTCTTAGTGCTAAGGTTTCCCGGGTCCCTGGGACCTCAAAATCCAGTGGGTTTGGTTTTGTTACTTTTTCATCAGCTGAGGATGTAGAAGCTGCAATATCATCTTTCAACAATTCTTTGTTAGAAGCGCAAAAAATTCGTGTGAATAAGGCGTAG 675 0.4533 MASLLSPPNFVSLTTPPTSSSSTHIILNLRQPLLKLVPSLAVGTLTHRFRRPFAVVAEEVAVTTRDPNSEAARRLYVGNIPRTVTNDELAKILEEHGAVEKAQVMYDKYSGRSRRFAFVTMKTVEDANAVIEKLNGTVEESENIDSPHKVYVGNLAKTVTTDTLKSFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSAEDVEAAISSFNNSLLEAQKIRVNKA 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2579g00001 224 MobiDBLite consensus disorder prediction 1 21 - -
Gabi2579g00001 224 FunFam 30S ribosomal protein 2, chloroplastic 136 224 - -
Gabi2579g00001 224 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 73 144 IPR000504 GO:0003723
Gabi2579g00001 224 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 150 219 IPR000504 GO:0003723
Gabi2579g00001 224 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 75 142 IPR000504 GO:0003723
Gabi2579g00001 224 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 148 224 IPR000504 GO:0003723
Gabi2579g00001 224 SUPERFAMILY RNA-binding domain, RBD 65 137 IPR035979 GO:0003676
Gabi2579g00001 224 PANTHER OS02G0815200 PROTEIN 68 223 - -
Gabi2579g00001 224 Coils Coil 124 144 - -
Gabi2579g00001 224 SUPERFAMILY RNA-binding domain, RBD 142 224 IPR035979 GO:0003676
Gabi2579g00001 224 SMART rrm1_1 149 222 IPR000504 GO:0003723
Gabi2579g00001 224 SMART rrm1_1 74 147 IPR000504 GO:0003723
Gabi2579g00001 224 Gene3D - 56 140 IPR012677 -
Gabi2579g00001 224 Gene3D - 141 224 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2579g00001 Gabi-Chr2579 21246 30545 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2579g00001 60 224 Eukaryotic Initiation Factors Gene Family AT4G34110 31.522 1.18e-18 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2579g00001 K13126 - gmx:100811197 282.722