Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2574g00110 ATGAAGAGACTTGGCAGTTCCGATTCTTTGGGTGCTCTAATGACAAATTGTCCACAAACAGACGAACACAGTCCGAGGAACAACCACGTGTATGGCAGGGAGTTCCAATCCATGTTGGAAGGACTGGATGAGGAAGGGTGTATTGAAGAATCAGGGCATCACGTTGAGAAGAAACGACGACTAAGTGTGGATCAGGTCAAGGCTTTGGAGAAGAACTTCGAGGTAGAAAACAAGCTCGAACCAGACAGGAAAGTGAAGCTTGCCCAAGAACTTGGCTTGCAGCCAAGACAAGTAGCTGTTTGGTTCCAAAACCGTCGAGCTAGATGGAAAACCAAGCAATTGGAGAGAGATTATGGCGTTCTCAAAGCCAACTACGAAGCACTTAAACATAACTTTGACACCCTCCAACAGGACAACGAATCCTTACTCAAAGAGATTAATGAATTGAAATCAAGGCTGCAAGAAGAAAACACTGAAAGCGATGTTTCAGTGAAGGAAGAGATGATAACCCTGCACGAAGACTCAGAATATAAAATGATTGAACGGAGTAACCCATCTCATGAAACAGCCATTAATCCTGGATCCGATTCCAAGGACTTGAATTTTGGTTGCTTCAACAACAATGATGGGGTAGGAGCCGTTAACTCTTCGCTCTTCCCTGCTACAGAGTTCAAAGACGGTTCTTCCGATAGTGACTCAAGCGCAATCTTGAACGAAGAGAATAATAATAGCCCCAACGCGGCCATTTCTTCATCTGGGGTTCTTCAAAGTCACAACCTTTTGATGTCTCCTGGGTCGTCTTCAATACTCAAGTTCAATTGTTCTTCCTCATCCTCGCCATCTTCCATGAATTGCTTCCAGTTCCAGAAACAGTACCAGACACAGTACGTGAAGATGGAAGAGAACAATTTCCTCAGCGACGAGGCCTGCAATTTCTTCTCAGATGAACAAGCACCGACCTTGCACTGGTACTGTTCGGAAGAGTGGAGTTGA 993 0.4491 MKRLGSSDSLGALMTNCPQTDEHSPRNNHVYGREFQSMLEGLDEEGCIEESGHHVEKKRRLSVDQVKALEKNFEVENKLEPDRKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYEALKHNFDTLQQDNESLLKEINELKSRLQEENTESDVSVKEEMITLHEDSEYKMIERSNPSHETAINPGSDSKDLNFGCFNNNDGVGAVNSSLFPATEFKDGSSDSDSSAILNEENNNSPNAAISSSGVLQSHNLLMSPGSSSILKFNCSSSSSPSSMNCFQFQKQYQTQYVKMEENNFLSDEACNFFSDEQAPTLHWYCSEEWS 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2574g00110 330 Gene3D - 51 119 - -
Gabi2574g00110 330 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 49 299 IPR045224 GO:0003700
Gabi2574g00110 330 ProSitePatterns 'Homeobox' domain signature. 87 110 IPR017970 GO:0000981|GO:0006355
Gabi2574g00110 330 MobiDBLite consensus disorder prediction 9 25 - -
Gabi2574g00110 330 Pfam Homeodomain 57 110 IPR001356 GO:0003677
Gabi2574g00110 330 SUPERFAMILY Homeodomain-like 40 114 IPR009057 -
Gabi2574g00110 330 SMART HOX_1 55 116 IPR001356 GO:0003677
Gabi2574g00110 330 MobiDBLite consensus disorder prediction 224 250 - -
Gabi2574g00110 330 Pfam Homeobox associated leucine zipper 112 154 IPR003106 GO:0006355|GO:0043565
Gabi2574g00110 330 PRINTS Lambda-repressor HTH signature 92 108 IPR000047 GO:0003677
Gabi2574g00110 330 PRINTS Lambda-repressor HTH signature 83 92 IPR000047 GO:0003677
Gabi2574g00110 330 FunFam Homeobox-leucine zipper protein HAT5 50 114 - -
Gabi2574g00110 330 CDD homeodomain 57 113 IPR001356 GO:0003677
Gabi2574g00110 330 MobiDBLite consensus disorder prediction 1 28 - -
Gabi2574g00110 330 Coils Coil 111 159 - -
Gabi2574g00110 330 ProSiteProfiles 'Homeobox' domain profile. 52 112 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2574g00110 Gabi-Chr2574 1031821 1034170 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2574g00110 1 326 Homeobox Transcription Factor Family AT2G22430 49.133 4.01e-83 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gabi2574g00110 Homeodomain 5.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2574g00110 K09338 - qsa:O6P43_030496 469.159