Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2574g00109 ATGGCTTTTCATCATAGAAAACTACTGCATCAGTATCAGTATCAGTATCAGTACCATGGAAACCCAACACCTTCCCCTCATGAATCACCAGTTGCACTGCCTCTGGTATTACCCCATTTACCTTCCCTTGAATTTTATCATAGCCATGCCCATGTGCATAGCCATCCCGTTTTACTTCGAGTCGCTATGATTGTCATGGCTTGCTTGGTTGGTTTGGTTATGTTTCTTTGCACCTTGTCCATAATCCAAAGGAGCTATTATTCAAGGAGACACAACCAAAGAAACACACCTATATTGTTCGATGTAAATGGAGATTCTCCAGTTTCAGATGATGATGATGATGATAACGAGGGACAAGTCATTAACCACCCCATATGGTTCATCCGCACGGTGGGTCTCAACCAATCAGTCATAGATTCCGTCACAGTTTTCAAGTACAGAAAAGAGGAAGGACTAATAGATGGGACAGAGTGTTCAGTTTGCCTAGGTGAGTTTCAACAAGAAGAGAGTCTCAGACTCTTGCCCAAGTGTAGCCACGCTTTTCACATCCCTTGCATTGATACATGGTTGAGATCTCATAAAAATTGTCCCTTGTGCCGTGCACCTGTGGTTCATGATGCTGGTTGTGGTGCAGAGGTGAGAGTCACTGATGAGCCTGATTCAAACGTAAACGTTTCTGGTCAGAATCAGAACCAAGAGGCCCATGTAGAGAACTTTGATCATTTTGGAGAGAGTGAGAGTAGTACACTGAGGATTGGAGATGATGACTCTAGTAATTGCCATTCTTCAGAGGAAGTGGAAGAGGAAATACAACCTGTGAGGAGGTCAATTTCTATGGATTCATCTTCTGCTTCAATGATATTTCATGATGTGCTAGATTTAAATTCTGATCGAGAGAGCTCAGAGAACCAACTTGGTGACAAAATCAATTCAAGTAGCAAGGACATGACCGTTGCTAAGCAGGGTAGTGGAAGTTCAACCATTTGCAAAGTGGCTTCAATTGGACTTGCATTGCAGAATAGGCCAATCTCAACTAGAAGATCCTTCTCACATAACACAAAATTTTTATTTTCTAGACACTGTAGGAGCCAGAGTTCCACTCTTCCCTTGTAG 1113 0.425 MAFHHRKLLHQYQYQYQYHGNPTPSPHESPVALPLVLPHLPSLEFYHSHAHVHSHPVLLRVAMIVMACLVGLVMFLCTLSIIQRSYYSRRHNQRNTPILFDVNGDSPVSDDDDDDNEGQVINHPIWFIRTVGLNQSVIDSVTVFKYRKEEGLIDGTECSVCLGEFQQEESLRLLPKCSHAFHIPCIDTWLRSHKNCPLCRAPVVHDAGCGAEVRVTDEPDSNVNVSGQNQNQEAHVENFDHFGESESSTLRIGDDDSSNCHSSEEVEEEIQPVRRSISMDSSSASMIFHDVLDLNSDRESSENQLGDKINSSSKDMTVAKQGSGSSTICKVASIGLALQNRPISTRRSFSHNTKFLFSRHCRSQSSTLPL 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2574g00109 370 MobiDBLite consensus disorder prediction 298 320 - -
Gabi2574g00109 370 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 132 207 IPR013083 -
Gabi2574g00109 370 MobiDBLite consensus disorder prediction 305 320 - -
Gabi2574g00109 370 FunFam RING-H2 finger protein ATL54 133 206 - -
Gabi2574g00109 370 CDD RING-H2_EL5-like 157 200 - -
Gabi2574g00109 370 MobiDBLite consensus disorder prediction 243 273 - -
Gabi2574g00109 370 SMART ring_2 158 199 IPR001841 -
Gabi2574g00109 370 SUPERFAMILY RING/U-box 139 206 - -
Gabi2574g00109 370 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 55 206 IPR044675 -
Gabi2574g00109 370 ProSiteProfiles Zinc finger RING-type profile. 158 200 IPR001841 -
Gabi2574g00109 370 Pfam Ring finger domain 157 200 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2574g00109 Gabi-Chr2574 994843 996805 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2574g00109 100 306 C3H Transcription Factor Family AT4G33565 38.647 1.60e-40 145