Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2574g00107 ATGGAAGTATCATGCTCACATTGGTTTTTATCAGTGTCACCCTCCGTTTCTGTCAGCAGCTCAAAAGCAGCAATGAAGCTTTCAGAATTTGTAAGATGCCCAATAAAAGTTCAAAGATGTGCTGGTAGAGTTGTACAGACAGAATTAATAGTTCAAGTTGATCACAGAGATGTAGTTCCCGGTGACATTGTGATTTTTGAACCTGGGGACCTCTTTCCCGGAGATATTAGGTTGTTATCTTCAAAACATCTTGTTGTAAGCCAGGCCTCACTAACTGGGGAATCTTGGACAACTGAGAAAACTGCCGATATCAGAGAAGATCACAGCACACCTTTAATAGATTTAAAGAACATCTGCTTTATGGGCACAAACGTGGTATCAGGTACAGGAACAGGCTTAGTTGTTTCAACTGGATCTAATACTTACATGAGCACCATGTTTTCAAAAGTTGGAAAGAGGAAGCCACCAGATGACTTTGAAAGGGGTCTCAGATGGATATTTTACTTGCTTATTTCAGTTATGCTAGTAGTAGTTACAATTATGTTTGTGACAGATTACATGACATCTCTTAATTTGAGCAACAGTGTTCTTTTTGCAATCTCAGTTGCATCTGCCCTCAATCCTCAGATGCTTCCCCTCATTATTAACACTTGCCTTGCAAAAGGAGCACTTGCTATGGCTAAAGACAGATGTATAGTCAAAAGTTTAACAGCTATACGCGAAATGGGATCAATGGATATCCTTTGTATTGACAAGACAGGCACCCTTACAATGAATCGTGCAATCATGGTTAATCATCTTGACTGCAGGGGTTTACCTCAAGAAAAAGTTCTACGCTATGCCTTCCTCAATTCTTACTTTAAGACTGATCAGAAGTATCCTCTGGATGATGCTATTTTGGCATATGTATATACAAATGAATTCAGGTTTCAGCCATCCAAGTGGAGGAAGATAGATGAGATTCCTTTTGACTTCATAAGAAGAAGAGTATCTGTCATCATGGAAACAGAAGACATACGCTCGCAGTTCTTTGGCAGGTTCCTGGTGACAAAAGGAGCACTGTTGGAAGTCATGAGAGTTTGTTCTTTTATTGAAAATTTTGATAAAGATGAAATTTCCACCTTCTCTTCGGATGACTATCAAAGAATCTTAAACCTGTCAGAAGAATTGAGCACTGAAGGGTTAAGGGTTATAGCAGTAGCTATAAGGAAGCTGGAAATGGTGCGCCTTTCTTTGCTCCCTGTTTTAAATGAGCAAACATGCAAAACAAGTAATGGAAGCAAGAGATTTAACGGGGATTTGGAAAGAGACATGATATTCCTGGGCCTAATAACGTTTTTTGATCCACCCAAGGATTCAGCAAAGCAAGCTTTGTGGCGTTTGGCTGAGAAGGGAGTGAAGGCAAAGGTTTTGACAGGTGATTCGCTCTCCTTGACAACAAGGGTGTGCAGGGAAGTTGGCATAAGGACCACTCATGTAATAACGGGGCCTGAGCTAGAGCAACTTGACCAAGACACTTTCCATGAGACTGTTAAAAGAGCTACGGTGCTAGCTCGTCTCACCCCAACTCAGAAACTCCGAGTGGTGCAATCCTTGCAGACAATTGGAAACCACATTGTTGGGTTCTTGGGAGATGGAGTAAATGATTCACTGGCTCTGGATGCTGCTCATGTAAGCATTTCAGTGGACTCAGGGGTAGCCATTGCCAAAGACATGGCAGATATTATCTTACTTGAGAAAGATCTCAACGTGCTTGTTGCAGGAGTCGAGCATGGTAGACTCACCTTTGGCAACACAATGAAGTATGTAAAGATGTCAGTTATTGCTAACTTGGGAAGTGTCATTTCACTCCTCATAGCAACACTGATCTTCAAGTATGAGCCCTTGACTTCTAGACAGCTTCTTATTCAGAATTTCCTGTACAGTGTGGGACAAATAGCCATCCCTTGGGACAAGATGGATGAAGAGTATGTGAAGACTCCTCAGAAGTGGTCAGAGAGAGGCTTGCCCATGTTCATATTGTGGAATGGCCCAGTGTGCACTCTCTGTGATGTGACAGCACTTTTGTTTCTTTGGTTTTATTACAAGGCTTATTCTGATGTAGATGAGAAATTTTTCCATTCAGCTTGGTTCATTGAAGGTCTCCTCATGCAGACCCTCATTATCCACTTGATGAGGACAGAGAAAATCCCTTTCATACAGGACATTGCCTCTTGGCCTGTGATTTCCTCTACTCTTGTGATATCTGCAATTGGAATTGCATTTACATTTTCACCAATCGGGAAGGTCATGGAATTCACCCTTCTACCCCCCTCATATTTTGGATTTTTAATTGTTCTTTTTCTGGGATATTTTACATTTGGCCAGGTGATTAAGAAACTTTACATAATGGTTTATAAGAGGTGGCTTTGA 2412 0.4125 MEVSCSHWFLSVSPSVSVSSSKAAMKLSEFVRCPIKVQRCAGRVVQTELIVQVDHRDVVPGDIVIFEPGDLFPGDIRLLSSKHLVVSQASLTGESWTTEKTADIREDHSTPLIDLKNICFMGTNVVSGTGTGLVVSTGSNTYMSTMFSKVGKRKPPDDFERGLRWIFYLLISVMLVVVTIMFVTDYMTSLNLSNSVLFAISVASALNPQMLPLIINTCLAKGALAMAKDRCIVKSLTAIREMGSMDILCIDKTGTLTMNRAIMVNHLDCRGLPQEKVLRYAFLNSYFKTDQKYPLDDAILAYVYTNEFRFQPSKWRKIDEIPFDFIRRRVSVIMETEDIRSQFFGRFLVTKGALLEVMRVCSFIENFDKDEISTFSSDDYQRILNLSEELSTEGLRVIAVAIRKLEMVRLSLLPVLNEQTCKTSNGSKRFNGDLERDMIFLGLITFFDPPKDSAKQALWRLAEKGVKAKVLTGDSLSLTTRVCREVGIRTTHVITGPELEQLDQDTFHETVKRATVLARLTPTQKLRVVQSLQTIGNHIVGFLGDGVNDSLALDAAHVSISVDSGVAIAKDMADIILLEKDLNVLVAGVEHGRLTFGNTMKYVKMSVIANLGSVISLLIATLIFKYEPLTSRQLLIQNFLYSVGQIAIPWDKMDEEYVKTPQKWSERGLPMFILWNGPVCTLCDVTALLFLWFYYKAYSDVDEKFFHSAWFIEGLLMQTLIIHLMRTEKIPFIQDIASWPVISSTLVISAIGIAFTFSPIGKVMEFTLLPPSYFGFLIVLFLGYFTFGQVIKKLYIMVYKRWL 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2574g00107 803 Gene3D - 138 755 - -
Gabi2574g00107 803 PRINTS Magnesium-transporting ATPase signature 756 777 IPR006415 GO:0015444|GO:0015693|GO:0016020
Gabi2574g00107 803 PRINTS Magnesium-transporting ATPase signature 601 616 IPR006415 GO:0015444|GO:0015693|GO:0016020
Gabi2574g00107 803 PRINTS Magnesium-transporting ATPase signature 162 178 IPR006415 GO:0015444|GO:0015693|GO:0016020
Gabi2574g00107 803 PRINTS Magnesium-transporting ATPase signature 651 664 IPR006415 GO:0015444|GO:0015693|GO:0016020
Gabi2574g00107 803 PRINTS Magnesium-transporting ATPase signature 283 296 IPR006415 GO:0015444|GO:0015693|GO:0016020
Gabi2574g00107 803 PRINTS Magnesium-transporting ATPase signature 706 727 IPR006415 GO:0015444|GO:0015693|GO:0016020
Gabi2574g00107 803 PRINTS Magnesium-transporting ATPase signature 671 687 IPR006415 GO:0015444|GO:0015693|GO:0016020
Gabi2574g00107 803 Gene3D - 246 580 IPR023214 -
Gabi2574g00107 803 SFLD C1.7: P-type atpase like 231 593 - -
Gabi2574g00107 803 ProSitePatterns E1-E2 ATPases phosphorylation site. 251 257 IPR018303 -
Gabi2574g00107 803 Gene3D - 43 137 - -
Gabi2574g00107 803 PANTHER CATION TRANSPORTING ATPASE 21 792 - -
Gabi2574g00107 803 Gene3D - 261 447 IPR023299 GO:0000166
Gabi2574g00107 803 SUPERFAMILY Calcium ATPase, transduction domain A 43 148 IPR008250 -
Gabi2574g00107 803 SUPERFAMILY HAD-like 435 591 IPR036412 -
Gabi2574g00107 803 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 242 450 IPR023299 GO:0000166
Gabi2574g00107 803 Pfam haloacid dehalogenase-like hydrolase 245 556 - -
Gabi2574g00107 803 Pfam E1-E2 ATPase 43 228 - -
Gabi2574g00107 803 SUPERFAMILY Calcium ATPase, transmembrane domain M 150 800 IPR023298 -
Gabi2574g00107 803 SFLD p-type atpase 231 593 IPR044492 -
Gabi2574g00107 803 NCBIfam magnesium-translocating P-type ATPase 19 802 IPR006415 GO:0015444|GO:0015693|GO:0016020
Gabi2574g00107 803 NCBIfam HAD-IC family P-type ATPase 44 294 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi2574g00107 803 NCBIfam HAD-IC family P-type ATPase 508 622 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2574g00107 Gabi-Chr2574 977383 983904 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2574g00107 57 708 Primary Pumps ATPases(2) AT1G10130 25.301 2.48e-49 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2574g00107 K01531 - gmx:100795153 1338.55