Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2574g00106 ATGGGAAGAACCAAAGTTTCCACCTTATTCTCTGCTAATAACCATTACACGCTTCCTTATTCCAACACCATAAGCCAAACTCTTGTAAACAAGCAAGATACCAAGGAAAATCGATTCCCCTCTTCAGTCCTAGGATTCTTGTGGCGCCTCATCTATGGAAAGAAAGATGATGGGGGCTCACGAACTGAGGAAGAAGAGAAAGTCTACTCTTGGTTATACACCTTGGCCCAGTCTGAGAAAAACTTGGTCTTCGAGTACGTTGGGTCCACTGAAAGAGGCTTAAGTTTCACTGAAGCTGAGAGGAGACTGCGGGAAGATGGCCCAAATGTTCCACTTGAGTATTATTTTCCAAGCTGGTGGCATCTTCTATGGAACGCTCTTTTCCATCCTTTCAATCTCATTGTGATTATTTTATCTGCTCTGTCATTCATTACCAGTGATTATCCAAATGGAAGTATCATGCTCACATTGGTTTTTATCAGTGTCACCCTCCGTTTCTGTCAGGAATACAGCAGCTCAAAAGCAGCAATGAAGCTTTCAGAATTTGTAAGATGCCCAATAAAAGTTCAAAGATGTGCTGGTAGAGTTGTACAGACAGAATTAATAGTTCAAGTTGATCACAGAGATGTAGTTCCCGGTGACATTGTGATTTTTGAACCTGGGGACCTCTTTCCCGGAGATATTAGGTTGTTATCTTCAAAACATCTTGTTGTAAGCCAGGCCTCACTAACTGGGGAATCTTGGACAACTGAGAAAACTGCCGATATCAGAGAAGATCACAGCACACCTTTAATAGATTTAAAGAACATCTGCTTTATGGGCACAAACGTGGTATCAGGTACAGGAACAGGCTTAGTTGTTTCAACTGGATCTAATACTTACATGAGCACCATGTTTTCAAAAGTTGGAAAGAGGAAGCCACCAGATGACTTTGAAAGGGGTCTCAGATGGATATTTTACTTGCTTATTTCAGTTATGCTAGTAGTAGTTACAATTATGTTTGTGACAGATTACATGACATCTCTTAATTTGAGCAACAGTGTTCTTTTTGCAATCTCAGTTGCATCTGCCCTCAATCCTCAGATGCTTCCCCTCATTATTAACACTTGCCTTGCAAAAGGAGCACTTGCTATGGCTAAAGACAGATGTATAGTCAAAAGTTTAACAGCTATACGCGAAATGGGATCAATGGATATCCTTTGTATTGACAAGACAGGCACCCTTACAATGAATCGTGCAATCATGGTTAATCATCTTGACTGCAGGGGTTTACCTCAAGAAAAAGTTCTACGCTATGCCTTCCTCAATTCTTACTTTAAGACTGATCAGAAGTATCCTCTGGATGATGCTATTTTGGCATATGTATATACAAATGAATTCAGGTTTCAGCCATCCAAGTGGAGGAAGATAGATGAGATTCCTTTTGACTTCATAAGAAGAAGAGTATCTGTCATCATGGAAACAGAAGACATACGCTCGCAGTTCTTTGGCAGGTTCCTGGTGACAAAAGGAGCACTGTTGGAAGTCATGAGAGTTTGTTCTTTTATTGAAAATTTTGATAAAGATGAAATTTCCACCTTCTCTTCGGATGACTATCAAAGAATCTTAAACCTGTCAGAAGAATTGAGCACTGAAGGGTTAAGGGTTATAGCAGTAGCTATAAGGAAGCTGGAAATGGAGCAAACATGCAAAACAAGTAATGGAAGCAAGAGATTTAACGGGGATTTGGAAAGAGACATGATATTCCTGGGCCTAATAACGTTTTTTGATCCACCCAAGGATTCAGCAAAGCAAGCTTTGTGGCGTTTGGCTGAGAAGGGAGTGAAGGCAAAGGTTTTGACAGGTGATTCGCTCTCCTTGACAACAAGGGTGTGCAGGGAAGTTGGCATAAGGACCACTCATGTAATAACGGGGCCTGAGCTAGAGCAACTTGACCAAGACACTTTCCATGAGACTGTTAAAAGAGCTACGGTGCTAGCTCGTCTCACCCCAACTCAGAAACTCCGAGTGGTGCAATCCTTGCAGACAATTGGAAACCACATTGTTGGGTTCTTGGGAGATGGAGTAAATGATTCACTGGCTCTGGATGCTGCTCATGTAAGCATTTCAGTGGACTCAGGGGTAGCCATTGCCAAAGACATGGCAGATATTATCTTACTTGAGAAAGATCTCAACGTGCTTGTTGCAGGAGTCGAGCATGGTAGACTCACCTTTGGCAACACAATGAAGTATGTAAAGATGTCAGTTATTGCTAACTTGGGAAGTGTCATTTCACTCCTCATAGCAACACTGATCTTCAAGTATGAGCCCTTGACTTCTAGACAGCTTCTTATTCAGAATTTCCTGTACAGTGTGGGACAAATAGCCATCCCTTGGGACAAGATGGATGAAGAGTATGTGAAGACTCCTCAGAAGTGGTCAGAGAGAGGCTTGCCCATGTTCATATTGTGGAATGGCCCAGTGTGCACTCTCTGTGATGTGACAGCACTTTTGTTTCTTTGGTTTTATTACAAGGCTTATTCTGATGTAGATGAGAAATTTTTCCATTCAGCTTGGTTCATTGAAGGTCTCCTCATGCAGACCCTCATTATCCACTTGATGAGGACAGAGAAAATCCCTTTCATACAGGACATTGCCTCTTGGCCTGTGATTTCCTCTACTCTTGTGATATCTGCAATTGGAATTGCATTTACATTTTCACCAATCGGGAAGGTCATGGAATTCACCCTTCTACCCCCCTCATATTTTGGATTTTTAATTGTTCTTTTTCTGGGATATTTTACATTTGGCCAGGTGATTAAGAAACTTTACATAATGGTTTATAAGAGGTGGCTTTGA 2838 0.4147 MGRTKVSTLFSANNHYTLPYSNTISQTLVNKQDTKENRFPSSVLGFLWRLIYGKKDDGGSRTEEEEKVYSWLYTLAQSEKNLVFEYVGSTERGLSFTEAERRLREDGPNVPLEYYFPSWWHLLWNALFHPFNLIVIILSALSFITSDYPNGSIMLTLVFISVTLRFCQEYSSSKAAMKLSEFVRCPIKVQRCAGRVVQTELIVQVDHRDVVPGDIVIFEPGDLFPGDIRLLSSKHLVVSQASLTGESWTTEKTADIREDHSTPLIDLKNICFMGTNVVSGTGTGLVVSTGSNTYMSTMFSKVGKRKPPDDFERGLRWIFYLLISVMLVVVTIMFVTDYMTSLNLSNSVLFAISVASALNPQMLPLIINTCLAKGALAMAKDRCIVKSLTAIREMGSMDILCIDKTGTLTMNRAIMVNHLDCRGLPQEKVLRYAFLNSYFKTDQKYPLDDAILAYVYTNEFRFQPSKWRKIDEIPFDFIRRRVSVIMETEDIRSQFFGRFLVTKGALLEVMRVCSFIENFDKDEISTFSSDDYQRILNLSEELSTEGLRVIAVAIRKLEMEQTCKTSNGSKRFNGDLERDMIFLGLITFFDPPKDSAKQALWRLAEKGVKAKVLTGDSLSLTTRVCREVGIRTTHVITGPELEQLDQDTFHETVKRATVLARLTPTQKLRVVQSLQTIGNHIVGFLGDGVNDSLALDAAHVSISVDSGVAIAKDMADIILLEKDLNVLVAGVEHGRLTFGNTMKYVKMSVIANLGSVISLLIATLIFKYEPLTSRQLLIQNFLYSVGQIAIPWDKMDEEYVKTPQKWSERGLPMFILWNGPVCTLCDVTALLFLWFYYKAYSDVDEKFFHSAWFIEGLLMQTLIIHLMRTEKIPFIQDIASWPVISSTLVISAIGIAFTFSPIGKVMEFTLLPPSYFGFLIVLFLGYFTFGQVIKKLYIMVYKRWL 945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2574g00106 945 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 394 592 IPR023299 GO:0000166
Gabi2574g00106 945 SUPERFAMILY Calcium ATPase, transduction domain A 195 300 IPR008250 -
Gabi2574g00106 945 Gene3D - 185 289 - -
Gabi2574g00106 945 SUPERFAMILY Calcium ATPase, transmembrane domain M 88 942 IPR023298 -
Gabi2574g00106 945 SFLD Haloacid Dehalogenase 383 735 - -
Gabi2574g00106 945 SUPERFAMILY HAD-like 577 733 IPR036412 -
Gabi2574g00106 945 SMART Cation_ATPase_N_a_2 74 147 IPR004014 -
Gabi2574g00106 945 NCBIfam magnesium-translocating P-type ATPase 66 944 IPR006415 GO:0015444|GO:0015693|GO:0016020
Gabi2574g00106 945 Pfam Cation transporter/ATPase, N-terminus 83 142 IPR004014 -
Gabi2574g00106 945 PRINTS Magnesium-transporting ATPase signature 813 829 IPR006415 GO:0015444|GO:0015693|GO:0016020
Gabi2574g00106 945 PRINTS Magnesium-transporting ATPase signature 314 330 IPR006415 GO:0015444|GO:0015693|GO:0016020
Gabi2574g00106 945 PRINTS Magnesium-transporting ATPase signature 898 919 IPR006415 GO:0015444|GO:0015693|GO:0016020
Gabi2574g00106 945 PRINTS Magnesium-transporting ATPase signature 848 869 IPR006415 GO:0015444|GO:0015693|GO:0016020
Gabi2574g00106 945 PRINTS Magnesium-transporting ATPase signature 743 758 IPR006415 GO:0015444|GO:0015693|GO:0016020
Gabi2574g00106 945 PRINTS Magnesium-transporting ATPase signature 793 806 IPR006415 GO:0015444|GO:0015693|GO:0016020
Gabi2574g00106 945 PRINTS Magnesium-transporting ATPase signature 435 448 IPR006415 GO:0015444|GO:0015693|GO:0016020
Gabi2574g00106 945 PANTHER CATION TRANSPORTING ATPASE 88 934 - -
Gabi2574g00106 945 Pfam E1-E2 ATPase 195 380 - -
Gabi2574g00106 945 ProSitePatterns E1-E2 ATPases phosphorylation site. 403 409 IPR018303 -
Gabi2574g00106 945 Gene3D - 148 897 - -
Gabi2574g00106 945 Pfam haloacid dehalogenase-like hydrolase 397 698 - -
Gabi2574g00106 945 NCBIfam HAD-IC family P-type ATPase 651 764 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi2574g00106 945 NCBIfam HAD-IC family P-type ATPase 154 446 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi2574g00106 945 Gene3D - 398 722 IPR023214 -
Gabi2574g00106 945 Gene3D - 413 589 IPR023299 GO:0000166
Gabi2574g00106 945 SFLD p-type atpase 383 735 IPR044492 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2574g00106 Gabi-Chr2574 976222 983904 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2574g00106 83 863 Primary Pumps ATPases AT1G17260 25.613 4.57e-55 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2574g00106 K01531 - gmx:100795153 1592.02