Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2574g00092 ATGGTTTTAGGGGAAGACGATAAAGACCTCGCTTCCGGTGCCGGTGGCCGTGGCGGTGGTCATCGGAGAACATATTCGCGTTCAGTTTCATGGACTGACCGGTCGCCGGCGACTCGCAAGCCGGCGGCGAATAACAAACCAAGATCGTTGCTGCCACCCCTTCAGCCTCTCTCCATCAACAAGCGGAGCGTTGAGGAGTGGCCAAGTGCTGGATCTGATGATCTTGGAATTTGGCCACTTCCAGAGACTCCGAGAGGATCCGTGATGGGTTCGGATTCGGGTCAACCCGGGAAGGAGTTTCAGTTCAAGAGGGAGAAGTTGGCGTTCTATGACAAGGAATGTTCGAGAATCGCGGAGCATGTGTACTTGGGAAGTGATACGGTGGCGAAGAACCATGAGCTTCTAAGGCAGAATGGGATCACGCACGTGCTTAATTGTGTTGGGTTCGTTTGTCCTGAGTATTTCAAGAGCGATTTTGTGTATAAGACACTCTGGTTGCAGGATAGTCCAACAGAGGACATAACTAGTATTCTGTACGATGTGTTCGATTACTTTGAGGATGTTCGACAACAAGGTGGGCGTGTTCTTGTTCATTGCTGTCAAGGGGTTTCTAGATCAACCTCTTTGGTGATTGCATATATCATGTGGAGGGAGGGACAGAGCTTTGAAGATGCGTTTCAGTATGTGAAGAATGCAAGAGGTGTTACAAATCCAAACATGGGTTTTGCTTGTCAACTCTTGCAGTGTCAGAAAAGGGTACATGCTATGCCTGCAAGTCCAAATTCTCTTGTTAGGATGTATCGGATGGCTCCTCATTCTCCTTATGACCCTCTTCATTTGGTCCCCAAAATGGTTGACCAGCCATGTGCACAAGCACTTGATTCTCGTGGGGCCTTCATTGTCCATGTTCCTTCTGCTATATATGTTTGGATTGGTAAAAATTGTAGTTCGATGATGTCTTGCAATGCACGATCAGCAGCCATTCAGGTCATCCGTTATGAGAAGGCAAAGGGTCCAATTCTTAGCATCCATGAAGATGAAGAGCCACCAGAGTTTTGGGTTGCTCTTTCCAATCAGCAACTGTTATCAGGTAATTGTGACAAGGCAGAGGACAAGAATGATATAGTATTGTTGCCTTCTTCGGATGGGATGGAGATTGATGCTGCAGTTGATATGGGAATTCGTTCAAGGAAAGTTGATGAATATGATTTGGATTTTGGGATTTTCCACAAGGCGCTCGCTGGTGGGTTTGTTCCGCCTTTTTCTTTGTCTAATACTGGATCAGAAACTGAAACTTGCCTTCCTGCTAGAGAAAATGGTTGGGGAAGACTGAGGAAGAAGCTTGCTAGTGGTATCGTGAAAGGATTGTTCACATCCTCCAAATGCTGTGATGCAACCTCATCCAAAGATGAATCGAGTGTGAACATGGAAGAAGAAAATCAACATTCTGTAGTTGACCCTTTATCACCATCATCAAACCATCTTTGTGGTTCACCTGATTCCTTTGAATGTTTTGTAGATAACAGCTCGGACAAGGCTAAAGATTATCCTGAAGTCATGGATCACTTTGTTCCTATTGTTGATTCACCATCACTGCCACCATCTCCTCACCAAACTTCAAATTCTTTTCCTTGTTTTCTTAGCAGCAGCCCGAAATTCAGTTCCAAGTCGCCAACACTTTCACCCTGCAGTTCTGATTATGCCAGTTCCTTTACATTCTCACCTTCATCTACAAATTGGTCTGACTTGTCATTCATGTCTTCTCAGCAGCCATCACCTTCTAGCCTGGAATCAACTGAACCCTTTTATGTTAAAGATGCATCTATCTCAGAAAATTCAGGTTTACTCCACAAAGAAGCTCTCTCTTCATCTTCAGAGCCATTTTTGGCTAATCACACCTTGGTAGGGGCAAACACCAATTTTCCGTGCAAAGGATCTAATCCCTCCATTGCAGAGCGCAGAGGGAGTAATCCACCACCTCGCATGTTGCTAACCTCGGTCAGTGAATCATCCCAACCCCACAAGATCATGGTAAAATCACAGTCATTCTCTTTACCTGACTTAGATGATAATTTGAAGAAGGATGTTAGATGCAATCAATCTGATCTTGAAAACAGTGGAAAATGGCTGACATCAGATGCTGATAACGTAAGTACAGAAGTTGAAAGTGAGATTACTGACAGAGAATCAATGTAG 2196 0.4476 MVLGEDDKDLASGAGGRGGGHRRTYSRSVSWTDRSPATRKPAANNKPRSLLPPLQPLSINKRSVEEWPSAGSDDLGIWPLPETPRGSVMGSDSGQPGKEFQFKREKLAFYDKECSRIAEHVYLGSDTVAKNHELLRQNGITHVLNCVGFVCPEYFKSDFVYKTLWLQDSPTEDITSILYDVFDYFEDVRQQGGRVLVHCCQGVSRSTSLVIAYIMWREGQSFEDAFQYVKNARGVTNPNMGFACQLLQCQKRVHAMPASPNSLVRMYRMAPHSPYDPLHLVPKMVDQPCAQALDSRGAFIVHVPSAIYVWIGKNCSSMMSCNARSAAIQVIRYEKAKGPILSIHEDEEPPEFWVALSNQQLLSGNCDKAEDKNDIVLLPSSDGMEIDAAVDMGIRSRKVDEYDLDFGIFHKALAGGFVPPFSLSNTGSETETCLPARENGWGRLRKKLASGIVKGLFTSSKCCDATSSKDESSVNMEEENQHSVVDPLSPSSNHLCGSPDSFECFVDNSSDKAKDYPEVMDHFVPIVDSPSLPPSPHQTSNSFPCFLSSSPKFSSKSPTLSPCSSDYASSFTFSPSSTNWSDLSFMSSQQPSPSSLESTEPFYVKDASISENSGLLHKEALSSSSEPFLANHTLVGANTNFPCKGSNPSIAERRGSNPPPRMLLTSVSESSQPHKIMVKSQSFSLPDLDDNLKKDVRCNQSDLENSGKWLTSDADNVSTEVESEITDRESM 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2574g00092 731 ProSitePatterns Tyrosine specific protein phosphatases active site. 197 207 IPR016130 GO:0016311|GO:0016791
Gabi2574g00092 731 MobiDBLite consensus disorder prediction 25 39 - -
Gabi2574g00092 731 SUPERFAMILY Actin depolymerizing proteins 259 362 - -
Gabi2574g00092 731 SMART VILL_6 268 359 IPR007122 GO:0051015
Gabi2574g00092 731 Gene3D Severin 264 362 IPR029006 -
Gabi2574g00092 731 Gene3D Protein tyrosine phosphatase superfamily 95 255 IPR029021 -
Gabi2574g00092 731 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 172 233 IPR000387 GO:0016311|GO:0016791
Gabi2574g00092 731 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 108 255 IPR029021 -
Gabi2574g00092 731 MobiDBLite consensus disorder prediction 703 719 - -
Gabi2574g00092 731 Pfam Dual specificity phosphatase, catalytic domain 121 251 IPR000340 GO:0008138|GO:0016311
Gabi2574g00092 731 ProSiteProfiles Dual specificity protein phosphatase domain profile. 113 255 IPR020422 GO:0006470|GO:0008138
Gabi2574g00092 731 MobiDBLite consensus disorder prediction 703 731 - -
Gabi2574g00092 731 MobiDBLite consensus disorder prediction 1 55 - -
Gabi2574g00092 731 PANTHER MKPA PROTEIN 21 676 - -
Gabi2574g00092 731 CDD DSP 114 248 - -
Gabi2574g00092 731 SMART dsp_5 113 252 IPR020422 GO:0006470|GO:0008138
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2574g00092 Gabi-Chr2574 865679 868568 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2574g00092 35 149 Protein tyrosine phosphatase (PTP) family AT3G55270 49.600 7.34e-32 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2574g00092 - - lja:Lj6g3v0574850.1 956.436