Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2574g00048 ATGCAGAGCCAACTTGTGTGTAATGGTTGTAGGAGCATTCTGCTTTACCCTAGAGGGGCAACCAATGTTTGTTGTGCATTGTGCAACACAATTACCTCCGTTCCCCCACCTGGGATGGAAATGGCTCAAATTTATTGTGGAGGCTGTAGGATAATGCTAATGTACACACGTGGAGCTACAAGTGTGAGATGTTCCTGCTGTCACACTGTAAACCTTGTTTCGGCATCCAATCAAGTTGCCCATGTCCATTGTGGGAACTGCCGGACAACACTCGTGTATCCATATGGAGCTCCATCAGTCAAATGTGCTGTTTGTCACTATATTACTAACGTCAGTATGACCAACGGAAGGCTTCCAATTCCTGTTCATAGACCTAATGGGACAACCAACTCTGGAACTACTTCAACATCAGTGCCCCCATCACAGAGCCAAACAGTGGTGGTAGAAAATCCAATGTCTGTTGATTCAAGTGGGAAACTGGTGAGCAATGTTGTTGTTGGCGTTACAACAGATAAGAAATAA 522 0.4502 MQSQLVCNGCRSILLYPRGATNVCCALCNTITSVPPPGMEMAQIYCGGCRIMLMYTRGATSVRCSCCHTVNLVSASNQVAHVHCGNCRTTLVYPYGAPSVKCAVCHYITNVSMTNGRLPIPVHRPNGTTNSGTTSTSVPPSQSQTVVVENPMSVDSSGKLVSNVVVGVTTDKK 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2574g00048 173 PANTHER PROTEIN LSD1 2 172 IPR040319 -
Gabi2574g00048 173 MobiDBLite consensus disorder prediction 123 142 - -
Gabi2574g00048 173 MobiDBLite consensus disorder prediction 124 142 - -
Gabi2574g00048 173 Pfam LSD1 zinc finger 84 108 IPR005735 -
Gabi2574g00048 173 Pfam LSD1 zinc finger 7 31 IPR005735 -
Gabi2574g00048 173 Pfam LSD1 zinc finger 46 70 IPR005735 -
Gabi2574g00048 173 NCBIfam zinc finger domain, LSD1 subclass 4 34 IPR005735 -
Gabi2574g00048 173 NCBIfam zinc finger domain, LSD1 subclass 43 73 IPR005735 -
Gabi2574g00048 173 NCBIfam zinc finger domain, LSD1 subclass 81 110 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2574g00048 Gabi-Chr2574 511233 517705 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Gabi2574g00048 zf-LSD1 1.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2574g00048 - K12191 gmx:100776394 308.531