LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi2574g00045	ATGCCTCACCTGCCAGGCAACGTGGCTTGCATGCAGCAGAGGTCGCTTGTGTCAGAAGCGAACTCTGACACCACTAGGAAGTTGACACATCAACATATCAAATTCGCTACTGCTCTGGACGAACTTGCCCTCGTGTCAGTTTGCCACAAGTTAAACTCCCTTGGTAATCTCCTAAAGTTAAACCAGATTGATTTGTCAAGAAATGAACTTGTGGGAAGAATACCCACAAGTTTTGGCAATTTTCAAAACCTGCTCTACATGGATTTATCCAGCAACAAACTCAATGGAAGCATACCTATGGAAATCCTCAATCTCCCTACTTTGAGCAATGTTCTAAACTTGTCTATGAACTTCTTGAGTGGACCAATACCTCAAGTTGGGAAATTGCCTAGCGTTGCCTCCGTTGACTTTTCTAATAACCAATTGTATGATGGCATCCCCAGCTCATTCAGCAATTGTCTGAGCTTGGAAAAATTGATTTTGTCCCGGAATCTTCTTTCAGGTCCCATTCCAAAAACTCTTGGAGATGTGAGAGGCTTGGAAACTTTGGACCTCTCTTCCAACCAACTCTCAGGATCCATTCCTATTGAGCTTGAAAATCTACGTGCCCTTAAGCTTTTAAACCTCTCTTACAATGATCTAGAAGGAGCTATTCCTAGTGGTGGAATTTTCCAAAATCTCACTGCTGTCCATGTAGAAGGCAATAGAAAACTCTGCTCGCATTCCTTATGTGTGCCTCATGGCCATGGAAGAAGAAATGTCCGACTTTACATCATCATAGCCATTGTGGTAGCGTTGATACTATGTCTCACAATTGGCTTGCTACTATACATAAAGAATGGAAAAGGGAAGGTAACAGCAGCACCAGCTTCTGAACTGCTAAAGCCTCATGCTCTAATGGTCTCTTATGACGAGCTTCGTCTTGCAACTGAGGCGTTCAACCAAGAAAATTTAATAGGAATTGGGAGCTTTGGTACAGTATATAGAGGCCATTTAAGTCATGGAAATACTGTTGCAGTGAAAGTGCTTGACACTCTAAGAACTGGTTCTTTAAAGAGTTTCTTTGCAGAGTGCGAGGCTATGAAGAACTCAAGGCATAGAAATCTTGTTAAGTTGATCACATCATGCTCCAGTGTTGACTTTAAAAACAATGAATTTTTGGCTCTGGTCTATGAGTACTTGTGTAATGGGAGCTTGGAAGATTGGATTACGGGAAGGAGAAAGCATGCAAATGGAAATGGGTTGAACCTTATGGAGAGACTGAATATAGCTATTGATGCTGCTTGTGCATTGGATTACCTGCACAATGATAGTGAAATTCCTATTGTGCATTGTGATTTGAAGCCCAGCAACATTCTCCTGGATGAAGATATGACTGCAAAGGTTGGAGACTTTGGATTGGCTAGGTTGCTGATTCAAAGATCAACTCATCAAGTTTCCATCAGCTCCACTCATGCCCTTAGAGGTTCAATTGGTTACATACCTCCAGAGTATGGATGGGGAGAGAAACCATCTGCAGCTGGAGATGTATATAGTTTTGGGATAGTGTTACTAGAACTCTTCTCTGGGAGAAGCCCAACTGATGAATGCTTCACAGGAGGACAAAGCATAACAAGATGGGTGCAAACAGCATTCAAAGATAAGACTGTGCAAGTCATTGACCCTCAGCTGCTATCCCTCATTTTTCATGATGACCATGCCAATAGTTCCAATCTACAACTCTCTTGTATGGAAGCAATTGTAGGAGTTGGCCTTTCATGCACTGCAGACAATCCAAATGAACGCATTGGCATTAGAGATGCTCTTCGCCAACTAATAGCTGCTAGAGACTCTCTTTTGAAACTCTGA	1848	0.4226	MPHLPGNVACMQQRSLVSEANSDTTRKLTHQHIKFATALDELALVSVCHKLNSLGNLLKLNQIDLSRNELVGRIPTSFGNFQNLLYMDLSSNKLNGSIPMEILNLPTLSNVLNLSMNFLSGPIPQVGKLPSVASVDFSNNQLYDGIPSSFSNCLSLEKLILSRNLLSGPIPKTLGDVRGLETLDLSSNQLSGSIPIELENLRALKLLNLSYNDLEGAIPSGGIFQNLTAVHVEGNRKLCSHSLCVPHGHGRRNVRLYIIIAIVVALILCLTIGLLLYIKNGKGKVTAAPASELLKPHALMVSYDELRLATEAFNQENLIGIGSFGTVYRGHLSHGNTVAVKVLDTLRTGSLKSFFAECEAMKNSRHRNLVKLITSCSSVDFKNNEFLALVYEYLCNGSLEDWITGRRKHANGNGLNLMERLNIAIDAACALDYLHNDSEIPIVHCDLKPSNILLDEDMTAKVGDFGLARLLIQRSTHQVSISSTHALRGSIGYIPPEYGWGEKPSAAGDVYSFGIVLLELFSGRSPTDECFTGGQSITRWVQTAFKDKTVQVIDPQLLSLIFHDDHANSSNLQLSCMEAIVGVGLSCTADNPNERIGIRDALRQLIAARDSLLKL	615

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi2574g00045	615	ProSitePatterns	Protein kinases ATP-binding region signature.	319	341	IPR017441	GO:0005524
	Gabi2574g00045	615	FunFam	Putative leucine-rich repeat receptor-like serine/threonine-protein kinase	394	615	-	-
	Gabi2574g00045	615	FunFam	LRR receptor-like serine/threonine-protein kinase ERECTA	124	245	-	-
	Gabi2574g00045	615	CDD	STKc_IRAK	319	605	-	-
	Gabi2574g00045	615	Gene3D	Ribonuclease Inhibitor	45	247	IPR032675	-
	Gabi2574g00045	615	Pfam	Protein kinase domain	314	603	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi2574g00045	615	SMART	serkin_6	313	612	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi2574g00045	615	FunFam	LRR receptor-like serine/threonine-protein kinase EFR	284	393	-	-
	Gabi2574g00045	615	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	442	454	IPR008271	GO:0004672\|GO:0006468
	Gabi2574g00045	615	Gene3D	Phosphorylase Kinase; domain 1	279	393	-	-
	Gabi2574g00045	615	SUPERFAMILY	L domain-like	52	243	-	-
	Gabi2574g00045	615	SUPERFAMILY	Protein kinase-like (PK-like)	295	605	IPR011009	-
	Gabi2574g00045	615	ProSiteProfiles	Protein kinase domain profile.	313	613	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi2574g00045	615	Pfam	Leucine rich repeat	155	214	IPR001611	GO:0005515
	Gabi2574g00045	615	ProSiteProfiles	Leucine-rich repeat profile.	179	202	IPR001611	GO:0005515
	Gabi2574g00045	615	PANTHER	OS04G0122200 PROTEIN	52	600	-	-
	Gabi2574g00045	615	PRINTS	Leucine-rich repeat signature	201	214	-	-
	Gabi2574g00045	615	PRINTS	Leucine-rich repeat signature	180	193	-	-
	Gabi2574g00045	615	Gene3D	Transferase(Phosphotransferase) domain 1	394	613	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi2574g00045	Gabi-Chr2574	468590	478185	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi2574g00045	54	614	Receptor kinase-like Gene Family	AT3G47570	41.581	6.25e-140	431

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-XII-1	Gabi2574g00045		Pkinase	1.2e-40	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi2574g00045	-		-	gmx:100783512	937.176