Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2574g00042 ATGGTTCAAGCAGCTACTCCACAGTGGCGTATTGGACCAAAAAACAAGCCAGTTTTGTGCAACGCATGTGGATCAAGATACAGGCAACGGGGAACCCTTGACAACTATCTTCCAAAGTGTCGTGATCCAAAGCTCGATGTTAAGGACAAACCTTCAAGCTCTGATCCAAATTCAGGCAAGAAAAATCCAGTTATATGGAACCCTAAAATTCCTTCAAAGAAACGTTCACCGCAAATCTCACGAATAGAAAGGATTCAAAAACAATTTCTCGATTTGTGGAACAATCTCGGGCTACCAAATGAGCCATCCCCAGAAGATTTGTTATTGTTCCATAACGTGAACAACTTAATACCTAGCAATGAAATAGGCCCTGGATGCATTCGTCTTTGA 390 0.4179 MVQAATPQWRIGPKNKPVLCNACGSRYRQRGTLDNYLPKCRDPKLDVKDKPSSSDPNSGKKNPVIWNPKIPSKKRSPQISRIERIQKQFLDLWNNLGLPNEPSPEDLLLFHNVNNLIPSNEIGPGCIRL 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2574g00042 129 Gene3D - 3 87 IPR013088 GO:0006355|GO:0008270
Gabi2574g00042 129 MobiDBLite consensus disorder prediction 34 78 - -
Gabi2574g00042 129 MobiDBLite consensus disorder prediction 35 55 - -
Gabi2574g00042 129 Pfam GATA zinc finger 5 32 IPR000679 GO:0006355|GO:0043565
Gabi2574g00042 129 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 35 - -
Gabi2574g00042 129 PANTHER OSJNBB0038F03.10 PROTEIN 6 51 IPR044589 -
Gabi2574g00042 129 SMART GATA_3 4 44 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2574g00042 Gabi-Chr2574 421671 422163 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2574g00042 4 102 C2C2-Gata Transcription Factor Family AT5G47140 33.333 5.71e-11 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gabi2574g00042 GATA 7e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2574g00042 - - vun:114178599 112.849