Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2574g00022 ATGAAGACTATTTTTGTGCTTCTCTTATTCTTTGTGGTGGCTCAAAATCCAGGCTCAGCAGCACCTTCTCCCACCATTTCCCCTACCAACAACAATTCTCAGTGTCCAATGGACATGAATTATGTACTAACAGTCCCTTGGAACTCCTCTGGCTGCCTTAACTTCCAACCCTTAGCAACCAAAAATGAAACACACACGAGTATTTGTTGCCAAACTTTGTTATCCCTCTTTGGCATAGCACTTGCACAAAACCTGGAGAAAACCTCTCTTTTCCAACTCCCCAATCTCCCTATATCTATCTCTTGCCTCCAAGACTTCCAATCCAAGCTCACTTCCTTATCATTTCCCAATAACCTTGTGTCCACCTGCTTTGATCCAGTTCAATTTGTTATCACTCCTAACATTTGTGCTCATGTTCAATCTAAGCAAGATTGGCTCTATAGGCTTGGTCCTACACCACTGTTTGACACTGCATGTAAACCAGACCTCAGTGATCTTACCAAATGTGATGCATGTGTGGAGGAGGGACTCAAGGTTGTGAATATGCTTACTGCCATTGATGGTAACACTTCACACTCCAAAGATTGCTTTTACTTCACAATACTTTATATTGCTGGAGTTGTGAATGACTTTGGCATTGAAAGCAAAGGTGTTATGTCTTGCATTTTTGAATTGTCTGTTAATCCTCAATTGGGTTCCAGAAGAAAGGGACATCATGCTCTTGAACTTGGGTTGATTGGGGCTTCAGTTGCATTCCTTGTCATCATGTGTTCTTTGTTAGGATTGTATTTTTGGTACACAAGGGGGGTGAAGAGAAAAGATGAAGAAAATTCGCTTGTTTATGCTGATCCAGAGGAACAAAGGTCCAAAATAAGATTAAGACCAGATACAGGTTCAACTTGGTTCAAGTTTGAGGACCTTGAGAAGGCCACCAACAGTTTTTCACCTCTGAACTTCATTGGTAGAGGAGGGTTTGGGTCAGTTTACAAGGGTATTCTACCTGATGGCACAATGGTTGCAGTTAAATGGATGGAAGAATCTGAATTTCAAGGGGATGCTGAGTTCTATAGTGAGGTGGAGATTATTAGCACCTTGAAGCACCGCAATTTGGTGCCTCTAAGAGGGTGTTGTGTGGTTGATGAGGATGATAAGCCTGAGCACAGTGGAAGGTATCTTGTTCTTGATTATATGCCACATGGTAGCCTTGAAGACCATCTATTTCCAAACATGGACAGTCAAAATACAAAGAAATGGCTATCATGGTCTCAAAGAAAAAGCATAATCTTGGATGTGGCAAATGCATTGGTTTATTTGCACTTTGGTGTTAAACCTGCTATTTATCACAGAGATATCAAAGCCACCAATATACTACTTGATGAAGGTATGAGGGCAAGGGTTGCAGATTTTGGGCTAGCCAAACAAAGCAGTGAAAGTAGGTCTCAGCTAAATACTAGAGTAGCTGGAACTCATGGATATCTTGCTCCAGAATATGCACTCTATGGTCAGCTAACTGAGAAGAGTGATGTATATAGCTTTGGTGTGGTTATTTTGGAGATTATGTGTGGAAGAAAAGCTCTTGACTTGTCTTCAGCAGGAACACCTACTTTCTTGATCACAGATTGGGTTTGGTCATTGATGAAATCAGGAGACTTAGGAGAAGCTTTGGATGGTTCTATCTTAATAGATGGAAATTCTAATATAAACATAATGGAGAGATTTTTGCTGGTTGGAATTCTGTCTTCTCATGTAATGGTTGATTCAAGGCCAACAATTTTGGATGTTTTGAAGATGTTAGAAGGGGATATTGAGGTTCCACCAATTCCAGATAGGCCAATGAGTCATGGGCACCATATGTTTTTCAATGGTCTTTCCATGGAATAG 1881 0.4078 MKTIFVLLLFFVVAQNPGSAAPSPTISPTNNNSQCPMDMNYVLTVPWNSSGCLNFQPLATKNETHTSICCQTLLSLFGIALAQNLEKTSLFQLPNLPISISCLQDFQSKLTSLSFPNNLVSTCFDPVQFVITPNICAHVQSKQDWLYRLGPTPLFDTACKPDLSDLTKCDACVEEGLKVVNMLTAIDGNTSHSKDCFYFTILYIAGVVNDFGIESKGVMSCIFELSVNPQLGSRRKGHHALELGLIGASVAFLVIMCSLLGLYFWYTRGVKRKDEENSLVYADPEEQRSKIRLRPDTGSTWFKFEDLEKATNSFSPLNFIGRGGFGSVYKGILPDGTMVAVKWMEESEFQGDAEFYSEVEIISTLKHRNLVPLRGCCVVDEDDKPEHSGRYLVLDYMPHGSLEDHLFPNMDSQNTKKWLSWSQRKSIILDVANALVYLHFGVKPAIYHRDIKATNILLDEGMRARVADFGLAKQSSESRSQLNTRVAGTHGYLAPEYALYGQLTEKSDVYSFGVVILEIMCGRKALDLSSAGTPTFLITDWVWSLMKSGDLGEALDGSILIDGNSNINIMERFLLVGILSSHVMVDSRPTILDVLKMLEGDIEVPPIPDRPMSHGHHMFFNGLSME 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2574g00022 626 CDD STKc_IRAK 320 600 - -
Gabi2574g00022 626 Pfam Protein kinase domain 317 527 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2574g00022 626 SUPERFAMILY Protein kinase-like (PK-like) 295 599 IPR011009 -
Gabi2574g00022 626 ProSiteProfiles Protein kinase domain profile. 314 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2574g00022 626 ProSitePatterns Protein kinases ATP-binding region signature. 320 342 IPR017441 GO:0005524
Gabi2574g00022 626 ProSitePatterns Serine/Threonine protein kinases active-site signature. 446 458 IPR008271 GO:0004672|GO:0006468
Gabi2574g00022 626 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 146 611 - -
Gabi2574g00022 626 Gene3D Transferase(Phosphotransferase) domain 1 397 604 - -
Gabi2574g00022 626 FunFam Receptor-like serine/threonine-protein kinase At4g25390 279 396 - -
Gabi2574g00022 626 Pfam SPARK 30 197 IPR043891 -
Gabi2574g00022 626 SMART serkin_6 314 585 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2574g00022 626 Gene3D Phosphorylase Kinase; domain 1 274 396 - -
Gabi2574g00022 626 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 397 606 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2574g00022 Gabi-Chr2574 245301 247181 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2574g00022 35 625 Receptor kinase-like Gene Family AT1G11050 60.167 0.0 686
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Gabi2574g00022 Pkinase 1.8e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2574g00022 - - vra:106765729 878.241