Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2574g00021 ATGAAATCTATTTTTGTGTTTCTCTTGTTCTTTGTCGTGGCTCCAAATCCATGCTCAGCAGCACCCTCTACCACCATTTCCCCTGCCAAAAATTCTACGTGCCCATTGGACATGAATTATGTGCCAACTGTCCCTTGGAACTCCTCTAGCTGCCATAACTTCCAACCTTTGGCATCCAAAAACGAAACACACACTAGTTTTTGTTGCAAAAATCTGTTATCCCTCTTTGGCATAGCACTTGCAAAACGCCTTAACAAAGATTCTCTTTTTCATCTTCCCAACCTTCCTACCTCCATCTCTTGTCTTCAAGACTTCCAATCCAATCTTACTTCCTTCTCACTTCCCAATAACCTTGTGTCCACCTGCTTTGACCCACTTCAATTTGTTATCACTCCCAACATCTGTGCTCAAATTCAATCTGAGCAAGATTGGCTCAGCAAGGTTGGTCCTACTTCAACAGCACTGATTAACAATTCCTGTAAACCAGACCTCACTGATCTTACTCGTTGCAATGCATGTGTGACAGAGGGGTACAGAGCTCAGCAGATGCTGACTGCTATTGATGGTAATACCTCACATTCCCAAGATTGCTTTTACTTCACAACACTATATATTGCTGGAGTTGTGAATGACTTTGGGCCTGAAAGCAAAGGTGTTTTGTCATGCATTTTTCTTTTGTCGGTTAGCACACAAGTTGATACCAGAAAGGACAATCATGCTCTTGTATTTGGGTTAGCTGGAGCTTCACTTGGACTCCTAGTTATCATGTCTTGTTTTGTAGGATTGTATTTCTGGTACAGTGGGTGGGTGAAGAGAAAAAATATTGAAAATTTGCTAGCCTATTCTGATCCATTGGAACAAAGGCCCAGCCTAAGCTTGAGACAATATGCAGGGTTAATTTGGTTCAAGTTTGAGGACCTTGTGAAGGCCACCAACAATTTTTCACCCCAGAACTTCATAGGGAGAGGTGGGTTTGGGTTAGTTCATAAGGGAATTTTACCCGATGGCACAATGGTTGCAATTAAAAGGATTGAAGAATCTGACTATCAAGGAGATGCTAAGTTCTACAGTGAGGTGGGGATCGTTAGCAACTTGAAGCACCGCAATCTGGTGCCGCTAAGAGGGTGTTGTGTAGTTAATGAGGATGAGAATTCTGAGTACAGAGGAAGGTATCTTGTTCAAGATTATATGCCAAACGGTAGCCTTGAAGACCATCTCTTCCCAACCATGGACAATCAAAATGCAAAGAAATCGCTGACTTGGCCTCAAAGAAAAAGCATAATCTTGGATGTGGCAAATGCGTTGGTTTATTTGCACTTTGGAGTTAAACCTGCAATTTATCACAGAGATATCAAAGCCTCCAATATACTGCTTGATGCAGGTATGAGGGCAAGGATTGCAGATTTTGGACTAGCCAAAGAGAGCAGTGATACTAGGTCTCATCTAAGTACTAAAATTGCTGGAACACATGGATATCTAGCCCCAGAATATGCACTCTATGGTCAGCTAACTGAGAAGAGTGATGTCTATAGCTTTGGTGTGGTTGTTTTGGAGATAATGTGTGGAAGAAAAGCTCTTAGCTTTTCTTCATCAGGAGCACCTGAATTCTTGATCACAGATTGGGTTTGGTCATTGATGAAATCGGGAAACATAGAAGAGGCTTTTGATGATTCTATCTTAATAGATGGAAACTCTACTAGAAACAAAATGGAGAGATTTTTGCTGGTAGGAATTCTGTCTTCTCATGTGATGGCTGCTTCAAGGCCAACAATTTTGGATGCTTTGAAGATGTTAGAAGGGGATATCGAGGTTCCACCAATTCCAGATAGGCCAATGACTCTTGGGAACTATATGTTTTCCAATGGTGATTGTTTCGGGATGAGCTCAGAATGTGGGTTCCAGATATTTGCCTGA 1914 0.4175 MKSIFVFLLFFVVAPNPCSAAPSTTISPAKNSTCPLDMNYVPTVPWNSSSCHNFQPLASKNETHTSFCCKNLLSLFGIALAKRLNKDSLFHLPNLPTSISCLQDFQSNLTSFSLPNNLVSTCFDPLQFVITPNICAQIQSEQDWLSKVGPTSTALINNSCKPDLTDLTRCNACVTEGYRAQQMLTAIDGNTSHSQDCFYFTTLYIAGVVNDFGPESKGVLSCIFLLSVSTQVDTRKDNHALVFGLAGASLGLLVIMSCFVGLYFWYSGWVKRKNIENLLAYSDPLEQRPSLSLRQYAGLIWFKFEDLVKATNNFSPQNFIGRGGFGLVHKGILPDGTMVAIKRIEESDYQGDAKFYSEVGIVSNLKHRNLVPLRGCCVVNEDENSEYRGRYLVQDYMPNGSLEDHLFPTMDNQNAKKSLTWPQRKSIILDVANALVYLHFGVKPAIYHRDIKASNILLDAGMRARIADFGLAKESSDTRSHLSTKIAGTHGYLAPEYALYGQLTEKSDVYSFGVVVLEIMCGRKALSFSSSGAPEFLITDWVWSLMKSGNIEEAFDDSILIDGNSTRNKMERFLLVGILSSHVMAASRPTILDALKMLEGDIEVPPIPDRPMTLGNYMFSNGDCFGMSSECGFQIFA 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2574g00021 637 FunFam Receptor-like serine/threonine-protein kinase At4g25390 279 396 - -
Gabi2574g00021 637 Pfam SPARK 30 198 IPR043891 -
Gabi2574g00021 637 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 397 606 - -
Gabi2574g00021 637 SUPERFAMILY Protein kinase-like (PK-like) 292 599 IPR011009 -
Gabi2574g00021 637 ProSitePatterns Protein kinases ATP-binding region signature. 320 342 IPR017441 GO:0005524
Gabi2574g00021 637 ProSitePatterns Serine/Threonine protein kinases active-site signature. 446 458 IPR008271 GO:0004672|GO:0006468
Gabi2574g00021 637 Gene3D Transferase(Phosphotransferase) domain 1 397 604 - -
Gabi2574g00021 637 Gene3D Phosphorylase Kinase; domain 1 284 396 - -
Gabi2574g00021 637 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 66 612 - -
Gabi2574g00021 637 ProSiteProfiles Protein kinase domain profile. 314 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2574g00021 637 SMART serkin_6 314 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2574g00021 637 Pfam Protein kinase domain 317 527 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2574g00021 Gabi-Chr2574 240236 242522 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2574g00021 26 637 Receptor kinase-like Gene Family AT1G11050 56.361 0.0 669
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Gabi2574g00021 Pkinase 1e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2574g00021 - - vra:106765729 901.353