Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2574g00004 ATGGAAAGCATTGCCGCGCAATTGAAGCGCGGCATCTCGCGGCAATTCTCGGCGGGGTCTTTACGGCGGACCCTGAGTCGTCAGTTCACGCGCCAGGCCTCGCTGGATCCGCGGCGGAACAACCTCCGTTTCAGCTTCGGCCGACAGTCTTCTCTCGACCCGATCCGACGGAGCCCCGTCGAGGACGAGGCTGAGCTCACGGTGCCGGAGAACCTTGACTCCACGATGCAGCTGCTGTTCATGGCGTGCAGGGGAGACGTTAAGGGAGTGGAGGATTTGCTCAATGAAGGCATTGACGTCAATAGCATCGACCTCGACGGCCGCACAGCCCTCCACATCGCCGCCTGCGAGGGTCATGTCGACGTCGCCACGCTCTTGCTCAGCCGCAAGGCTAATCTCGATGCACGTGATCGTTGGGGCAGTACGGCGGCGGCTGATGCTAAGCATTATGGAAATACGGAAGTTTATTACATGTTGAAGGCCCGTGGAGCAAAAGTGCCGAAAACCAGGAAGACTCCAATGACTGTTGCAAATCCTCGTGAAGTTCCAGAATATGAACTCAATCCATTAGAGCTACAGGTTCGGAAGAGTGATGGTATTTCAAAGGGAACATATCAAGTAGCCAAATGGAATGGCACAAAGGTTTCAGTGAAGATACTTGATAAGGATAGTTATTCAGATCCTGATGCCATAAATGCTTTCAAACAAGAGCTCACGTTACTAGAAAGGGTACGACATCCTAATGTGGTCCAGTTTGTTGGAGCTGTCACCCAAAATATACCTATGATGATTGTTAGAGAGTACCATACTAAGGGTGACCTAGCAAGCTATCTTCACAAGAAAGGGCGTTTGTCCCCATCAAAAGTTCTACGGTTTGCTCTTGATATTGCCAGGGGCATGAATTATCTTCATGAATGCAAACCAGATCCAATTATCCACTGTGATTTAAAGCCAAAAAATATTTTGCTGGATAATGGAGGCCAACTGAAGGTAGCTGGATTTGGCAATGTGAGATTGTTTCAAATCTCACCTGATGAAGCACAGCTGGTACAGCCGGAGTCTAACATCGACCTTTCAAGCTTGTACGTGGCACCAGAGATTTACAAAGATGAAGTATTCGATAGAAGTGTGGATGCATATTCTTTTGGTCTAGTTGTATATGAGATGATAGAGGGTATACACCCATTCCATCCCAAGTCCACGGAGGAGGCTGTGAAACTGATGTGCTTAGAAGGGAAAAGACCACCATTCAAGATCAAAACAAAAACTTATCCCCCGGAATTGAAAGAGCTGATTGAGGAATGCTGGGATCCAGAACCTGTTGTCAGACCAACATTTTATCAGATCATTGTACGGTTGGACAAAATTGTTGCAAATTGCTCAAAACAAGGATGGTGGAAAGATACTTTTAAACTTCCTTGGAAATAA 1428 0.4748 MESIAAQLKRGISRQFSAGSLRRTLSRQFTRQASLDPRRNNLRFSFGRQSSLDPIRRSPVEDEAELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVDVATLLLSRKANLDARDRWGSTAAADAKHYGNTEVYYMLKARGAKVPKTRKTPMTVANPREVPEYELNPLELQVRKSDGISKGTYQVAKWNGTKVSVKILDKDSYSDPDAINAFKQELTLLERVRHPNVVQFVGAVTQNIPMMIVREYHTKGDLASYLHKKGRLSPSKVLRFALDIARGMNYLHECKPDPIIHCDLKPKNILLDNGGQLKVAGFGNVRLFQISPDEAQLVQPESNIDLSSLYVAPEIYKDEVFDRSVDAYSFGLVVYEMIEGIHPFHPKSTEEAVKLMCLEGKRPPFKIKTKTYPPELKELIEECWDPEPVVRPTFYQIIVRLDKIVANCSKQGWWKDTFKLPWK 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2574g00004 475 FunFam Integrin-linked protein kinase 1 47 185 - -
Gabi2574g00004 475 SUPERFAMILY Protein kinase-like (PK-like) 203 453 IPR011009 -
Gabi2574g00004 475 Gene3D Transferase(Phosphotransferase) domain 1 270 469 - -
Gabi2574g00004 475 ProSiteProfiles Protein kinase domain profile. 190 457 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2574g00004 475 FunFam serine/threonine-protein kinase STY46-like 187 270 - -
Gabi2574g00004 475 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 145 456 - -
Gabi2574g00004 475 SUPERFAMILY Ankyrin repeat 75 175 IPR036770 -
Gabi2574g00004 475 ProSiteProfiles Ankyrin repeat profile. 106 138 IPR002110 GO:0005515
Gabi2574g00004 475 CDD STKc_MAP3K-like 200 453 - -
Gabi2574g00004 475 ProSiteProfiles Ankyrin repeat region circular profile. 106 138 - -
Gabi2574g00004 475 SMART ANK_2a 74 102 IPR002110 GO:0005515
Gabi2574g00004 475 SMART ANK_2a 106 135 IPR002110 GO:0005515
Gabi2574g00004 475 ProSitePatterns Serine/Threonine protein kinases active-site signature. 311 323 IPR008271 GO:0004672|GO:0006468
Gabi2574g00004 475 Gene3D Phosphorylase Kinase; domain 1 187 269 - -
Gabi2574g00004 475 FunFam Integrin-linked protein kinase family 270 469 - -
Gabi2574g00004 475 PIRSF ILK 8 474 - -
Gabi2574g00004 475 Pfam Ankyrin repeat 106 137 IPR002110 GO:0005515
Gabi2574g00004 475 SMART serkin_6 194 457 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2574g00004 475 Gene3D - 48 185 IPR036770 -
Gabi2574g00004 475 Pfam Protein tyrosine and serine/threonine kinase 200 452 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2574g00004 Gabi-Chr2574 57942 64563 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2574g00004 1 474 MAP Kinase Kinase Kinase AT2G43850 77.406 0.0 798
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-5 Gabi2574g00004 PK_Tyr_Ser-Thr 2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2574g00004 - - gmx:100810411 894.034