Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2572g00006 ATGGGTTCTCCAAATGGAAGATCAATGAATAAGTCTGAGGATGAAGTTCCTTTTGGCCCTGAATTAAACTTTCAACAATCAGATTCTACTCTGGTGGATGTACATGGATCACGTTCTGAAGAATTGCAGACCGCTCATCGTCAAACGTTGAGGGGTATTATTTACAGGAGCATTCGAGTCGTAGTTTTCTCTAACAAGCTCAACTTGCTTATGTTTTTTGGGCCTCTTGCGATTCTTTTACAGAAATTAACTGGTCATCATGGCTGGGTCTTTGCTCTGAGTTTATTGGGTATAATGCCTCTGGCGGAGCGGTTAGGTTATGCAACAGAGCAGCTGGCATTTTACACTGGAGATACAGTTGGGGGTCTTTTAAACGCCACATTTGGAAATGCAACAGAATTGATCATCTCAATATATGCACTGAAAAGTGGGATGACTCGGGTTGTTCAGCTTTCTTTACTGGGTTCAATTTTGTCAAATATGTTGCTGGTTCTTGGATGTGCATTCTTAAGTGGTGGGATTGTTTTTCATAAAAAGGAACAAGTGTTTAACAAGTCAATGGCTACTGTGAACTTAGGATTGTTGCTGATGGCAGTCATGGGCCTACTTTTTCCTGCTGTTCTACATTACACACACACGGAGGTCGATTTGGGGAAGTCAGAGTTGGCGCTTTCAAGATTCAGCAGCTGCATCATGCTTGTGGCCTATGCAGCATATCTATTTTTCCAGTTGAAAAGTCAAAAAAATCTCTATGTCTCTGTGAACGAGCAGGAGGGTCAGGATGGAAACAACGCAAACGATGATGATTCTCCTGATATTTCTAAATGGGAATCAATAATCTGGCTTTCAGTTATGACTGCTTGGATATCTATCCTTTCAGAATATTTGGTTAACGCTATAGAGGGAGCATCTACTGCATGGAAAATTCCAGTATCATTCATTAGTGTCATATTGCTTCCGTTAGTGGGGAATGCAGCAGAACATGCCAGTGCTATAATGTTTGCCATGAAAGATAAACTTGACATTTCCCTAGGAGTAGCAATAGGGTCATCCACACAGATATCTATGTTTGTGGTACCCTTTTGTGTGGTTATTGGCTGGATAACGGGGCATCCTATGGACCTAAACTTTCAACTTTTTGAGACTGCAGCATTATTTCTAACTGTTATCGTCGTAGCCTTCATGTTACAGGAAGGAACTGCTAATTACTTCAAAGGACTAATGCTTGTTCTTTGCTATCTGATTGTGGCAGCTAGTTTTTATGTACATGTAGATTCCTATCAGTAG 1287 0.4087 MGSPNGRSMNKSEDEVPFGPELNFQQSDSTLVDVHGSRSEELQTAHRQTLRGIIYRSIRVVVFSNKLNLLMFFGPLAILLQKLTGHHGWVFALSLLGIMPLAERLGYATEQLAFYTGDTVGGLLNATFGNATELIISIYALKSGMTRVVQLSLLGSILSNMLLVLGCAFLSGGIVFHKKEQVFNKSMATVNLGLLLMAVMGLLFPAVLHYTHTEVDLGKSELALSRFSSCIMLVAYAAYLFFQLKSQKNLYVSVNEQEGQDGNNANDDDSPDISKWESIIWLSVMTAWISILSEYLVNAIEGASTAWKIPVSFISVILLPLVGNAAEHASAIMFAMKDKLDISLGVAIGSSTQISMFVVPFCVVIGWITGHPMDLNFQLFETAALFLTVIVVAFMLQEGTANYFKGLMLVLCYLIVAASFYVHVDSYQ 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2572g00006 428 NCBIfam calcium/proton exchanger 58 420 - -
Gabi2572g00006 428 Gene3D - 116 257 IPR044880 -
Gabi2572g00006 428 Gene3D - 265 422 IPR044880 -
Gabi2572g00006 428 NCBIfam calcium/proton exchanger 70 421 IPR004798 GO:0006816|GO:0015369
Gabi2572g00006 428 FunFam Vacuolar cation/proton exchanger 118 257 - -
Gabi2572g00006 428 FunFam Vacuolar cation/proton exchanger 266 422 - -
Gabi2572g00006 428 Pfam Sodium/calcium exchanger protein 279 419 IPR004837 GO:0016020|GO:0055085
Gabi2572g00006 428 Pfam Sodium/calcium exchanger protein 89 244 IPR004837 GO:0016020|GO:0055085
Gabi2572g00006 428 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 39 425 IPR004713 GO:0006812|GO:0008324|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2572g00006 Gabi-Chr2572 46124 51707 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2572g00006 9 428 Antiporters AT1G55730 70.476 0.0 598
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2572g00006 K07300 - gmx:100799276 737.643