Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2572g00005 ATGGAGACTCGAGTTGAAGTGGAACCAACTCTTATTGCATCCAGATTCTTAGATGACTTGTCTAAGACTTGCAAGATGGGTTCTCCAAATGGAAGATCAATGAATAAGTCTGAGGATGAAGTTCCTTTTGGCCCTGAATTAAACTTTCAACAATCAGATTCTACTCTGGTGGATGTACATGGATCACGTTCTGAAGAATTGCAGACCGCTCATCGTCAAACGTTGAGGGGTATTATTTACAGGAGCATTCGAGTCGTAGTTTTCTCTAACAAGCTCAACTTGCTTATGTTTTTTGGGCCTCTTGCGATTCTTTTACAGAAATTAACTGGTCATCATGGCTGGGTCTTTGCTCTGAGTTTATTGGGTATAATGCCTCTGGCGGAGCGGTTAGGTTATGCAACAGAGCAGCTGGCATTTTACACTGGAGATACAGTTGGGGGTCTTTTAAACGCCACATTTGGAAATGCAACAGAATTGATCATCTCAATATATGCACTGAAAAGTGGGATGACTCGGGTTGTTCAGCTTTCTTTACTGGGTTCAATTTTGTCAAATATGTTGCTGGTTCTTGGATGTGCATTCTTAAGTGGTGGGATTGTTTTTCATAAAAAGGAACAAGTGTTTAACAAGTCAATGGCTACTGTGAACTTAGGATTGTTGCTGATGGCAGTCATGGGCCTACTTTTTCCTGCTGTTCTACATTACACACACACGGAGGTCGATTTGGGGAAGTCAGAGTTGGCGCTTTCAAGATTCAGCAGCTGCATCATGCTTGTGGCCTATGCAGCATATCTATTTTTCCAGTTGAAAAGTCAAAAAAATCTCTATGTCTCTGTGAACGAGCAGGAGGGTCAGGATGGAAACAACGCAAACGATGATGATTCTCCTGATATTTCTAAATGGGAATCAATAATCTGGCTTTCAGTTATGACTGCTTGGATATCTATCCTTTCAGAATATTTGGTTAACGCTATAGAGGGAGCATCTACTGCATGGAAAATTCCAGTATCATTCATTAGTGTCATATTGCTTCCGTTAGTGGGGAATGCAGCAGAACATGCCAGTGCTATAATGTTTGCCATGAAAGATAAACTTGACATTTCCCTAGGAGTAGCAATAGGGTCATCCACACAGATATCTATGTTTGTGGTACCCTTTTGTGTGGTTATTGGCTGGATAACGGGGCATCCTATGGACCTAAACTTTCAACTTTTTGAGACTGCAGCATTATTTCTAACTGTTATCGTCGTAGCCTTCATGTTACAGGAAGGAACTGCTAATTACTTCAAAGGACTAATGCTTGTTCTTTGCTATCTGATTGTGGCAGCTAGTTTTTATGTACATGTAGATTCCTATCAGTAG 1362 0.409 METRVEVEPTLIASRFLDDLSKTCKMGSPNGRSMNKSEDEVPFGPELNFQQSDSTLVDVHGSRSEELQTAHRQTLRGIIYRSIRVVVFSNKLNLLMFFGPLAILLQKLTGHHGWVFALSLLGIMPLAERLGYATEQLAFYTGDTVGGLLNATFGNATELIISIYALKSGMTRVVQLSLLGSILSNMLLVLGCAFLSGGIVFHKKEQVFNKSMATVNLGLLLMAVMGLLFPAVLHYTHTEVDLGKSELALSRFSSCIMLVAYAAYLFFQLKSQKNLYVSVNEQEGQDGNNANDDDSPDISKWESIIWLSVMTAWISILSEYLVNAIEGASTAWKIPVSFISVILLPLVGNAAEHASAIMFAMKDKLDISLGVAIGSSTQISMFVVPFCVVIGWITGHPMDLNFQLFETAALFLTVIVVAFMLQEGTANYFKGLMLVLCYLIVAASFYVHVDSYQ 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2572g00005 453 FunFam Vacuolar cation/proton exchanger 291 447 - -
Gabi2572g00005 453 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 63 450 IPR004713 GO:0006812|GO:0008324|GO:0016020
Gabi2572g00005 453 NCBIfam calcium/proton exchanger 83 445 - -
Gabi2572g00005 453 Gene3D - 141 282 IPR044880 -
Gabi2572g00005 453 Gene3D - 290 447 IPR044880 -
Gabi2572g00005 453 Pfam Sodium/calcium exchanger protein 114 269 IPR004837 GO:0016020|GO:0055085
Gabi2572g00005 453 Pfam Sodium/calcium exchanger protein 304 444 IPR004837 GO:0016020|GO:0055085
Gabi2572g00005 453 NCBIfam calcium/proton exchanger 95 446 IPR004798 GO:0006816|GO:0015369
Gabi2572g00005 453 FunFam Vacuolar cation/proton exchanger 143 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2572g00005 Gabi-Chr2572 46124 52048 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2572g00005 60 453 Antiporters AT1G55730 74.365 0.0 598
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2572g00005 K07300 - gmx:100799276 774.237