Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2572g00004 ATGGAGACTCGAGTTGAAGTGGAACCAACTCTTATTGCATCCAGATTCTTAGATGACTTGTCTAAGACTTGCAAGATGGGTTCTCCAAATGGAAGATCAATGAATAAGTCTGAGGATGAAGTTCCTTTTGGCCCTGAATTAAACTTTCAACAATCAGATTCTACTCTGGTGGATGTACATGGATCACGTTCTGAAGAATTGCAGACCGCTCATCGTCAAACGTTGAGGGGTATTATTTACAGGAGCATTCGAGTCGTAGTTTTCTCTAACAAGCTCAACTTGCTTATGTTTTTTGGGCCTCTTGCGATTCTTTTACAGAAATTAACTGGTCATCATGGCTGGGTCTTTGCTCTGAGTTTATTGGGTATAATGCCTCTGGCGGAGCGGTTAGGTTATGCAACAGAGCAGCTGGCATTTTACACTGGAGATACAGTTGGGGGTCTTTTAAACGCCACATTTGGAAATGCAACAGAATTGATCATCTCAATATATGCACTGAAAAGTGGGATGACTCGGGTTGTTCAGCTTTCTTTACTGGGTTCAATTTTGTCAAATATGTTGCTGGTTCTTGGATGTGCATTCTTAAGTGGTGGGATTGTTTTTCATAAAAAGGAACAAGTGTTTAACAAGTCAATGGCTACTGTGAACTTAGGATTGTTGCTGATGGCAGTCATGGGCCTACTTTTTCCTGCTGTTCTACATTACACACACACGGAGGTCGATTTGGGGAAGTCAGAGTTGGCGCTTTCAAGATTCAGCAGCTGCATCATGCTTGTGGCCTATGCAGCATATCTATTTTTCCAGTTGAAAAGTCAAAAAAATCTCTATGTCTCTGTGAACGAGGAGGGTCAGGATGGAAACAACGCAAACGATGATGATTCTCCTGATATTTCTAAATGGGAATCAATAATCTGGCTTTCAGTTATGACTGCTTGGATATCTATCCTTTCAGAATATTTGGTTAACGCTATAGAGGGAGCATCTACTGCATGGAAAATTCCAGTATCATTCATTAGTGTCATATTGCTTCCGTTAGTGGGGAATGCAGCAGAACATGCCAGTGCTATAATGTTTGCCATGAAAGATAAACTTGACATTTCCCTAGGAGTAGCAATAGGGTCATCCACACAGATATCTATGTTTGTGGTACCCTTTTGTGTGGTTATTGGCTGGATAACGGGGCATCCTATGGACCTAAACTTTCAACTTTTTGAGACTGCAGCATTATTTCTAACTGTTATCGTCGTAGCCTTCATGTTACAGGAAGGAACTGCTAATTACTTCAAAGGACTAATGCTTGTTCTTTGCTATCTGATTGTGGCAGCTAGTTTTTATGTACATGTAGATTCCTATCAGTAG 1359 0.4084 METRVEVEPTLIASRFLDDLSKTCKMGSPNGRSMNKSEDEVPFGPELNFQQSDSTLVDVHGSRSEELQTAHRQTLRGIIYRSIRVVVFSNKLNLLMFFGPLAILLQKLTGHHGWVFALSLLGIMPLAERLGYATEQLAFYTGDTVGGLLNATFGNATELIISIYALKSGMTRVVQLSLLGSILSNMLLVLGCAFLSGGIVFHKKEQVFNKSMATVNLGLLLMAVMGLLFPAVLHYTHTEVDLGKSELALSRFSSCIMLVAYAAYLFFQLKSQKNLYVSVNEEGQDGNNANDDDSPDISKWESIIWLSVMTAWISILSEYLVNAIEGASTAWKIPVSFISVILLPLVGNAAEHASAIMFAMKDKLDISLGVAIGSSTQISMFVVPFCVVIGWITGHPMDLNFQLFETAALFLTVIVVAFMLQEGTANYFKGLMLVLCYLIVAASFYVHVDSYQ 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2572g00004 452 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 63 449 IPR004713 GO:0006812|GO:0008324|GO:0016020
Gabi2572g00004 452 Pfam Sodium/calcium exchanger protein 114 269 IPR004837 GO:0016020|GO:0055085
Gabi2572g00004 452 Pfam Sodium/calcium exchanger protein 303 443 IPR004837 GO:0016020|GO:0055085
Gabi2572g00004 452 FunFam Vacuolar cation/proton exchanger 143 282 - -
Gabi2572g00004 452 FunFam Vacuolar cation/proton exchanger 290 446 - -
Gabi2572g00004 452 Gene3D - 289 446 IPR044880 -
Gabi2572g00004 452 Gene3D - 141 282 IPR044880 -
Gabi2572g00004 452 NCBIfam calcium/proton exchanger 83 444 - -
Gabi2572g00004 452 NCBIfam calcium/proton exchanger 95 445 IPR004798 GO:0006816|GO:0015369
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2572g00004 Gabi-Chr2572 46124 52048 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2572g00004 60 452 Antiporters AT1G55730 74.619 0.0 595
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2572g00004 K07300 - gmx:100799276 769.615