Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2572g00003 ATGGAGACTCGAGTTGAAGTGGAACCAACTCTTATTGCATCCAGATTCTTAGATGACTTGTCTAAGACTTGCAAGATGGGTTCTCCAAATGGAAGATCAATGAATAAGTCTGAGGATGAAGTTCCTTTTGGCCCTGAATTAAACTTTCAACAATCAGATTCTACTCTGGTGGATGTACATGGATCACGTTCTGAAGAATTGCAGACCGCTCATCGTCAAACGTTGAGGGGTATTATTTACAGGAGCATTCGAGTCGTAGTTTTCTCTAACAAGCTCAACTTGCTTATGTTTTTTGGGCCTCTTGCGATTCTTTTACAGAAATTAACTGGTCATCATGGCTGGGTCTTTGCTCTGAGTTTATTGGGTATAATGCCTCTGGCGGAGCGGCAGCTGGCATTTTACACTGGAGATACAGTTGGGGGTCTTTTAAACGCCACATTTGGAAATGCAACAGAATTGATCATCTCAATATATGCACTGAAAAGTGGGATGACTCGGGTTGTTCAGCTTTCTTTACTGGGTTCAATTTTGTCAAATATGTTGCTGGTTCTTGGATGTGCATTCTTAAGTGGTGGGATTGTTTTTCATAAAAAGGAACAAGTGTTTAACAAGTCAATGGCTACTGTGAACTTAGGATTGTTGCTGATGGCAGTCATGGGCCTACTTTTTCCTGCTGTTCTACATTACACACACACGGAGGTCGATTTGGGGAAGTCAGAGTTGGCGCTTTCAAGATTCAGCAGCTGCATCATGCTTGTGGCCTATGCAGCATATCTATTTTTCCAGTTGAAAAGTCAAAAAAATCTCTATGTCTCTGTGAACGAGCAGGAGGGTCAGGATGGAAACAACGCAAACGATGATGATTCTCCTGATATTTCTAAATGGGAATCAATAATCTGGCTTTCAGTTATGACTGCTTGGATATCTATCCTTTCAGAATATTTGGTTAACGCTATAGAGGGAGCATCTACTGCATGGAAAATTCCAGTATCATTCATTAGTGTCATATTGCTTCCGTTAGTGGGGAATGCAGCAGAACATGCCAGTGCTATAATGTTTGCCATGAAAGATAAACTTGACATTTCCCTAGGAGTAGCAATAGGGTCATCCACACAGATATCTATGTTTGTGGTACCCTTTTGTGTGGTTATTGGCTGGATAACGGGGCATCCTATGGACCTAAACTTTCAACTTTTTGAGACTGCAGCATTATTTCTAACTGTTATCGTCGTAGCCTTCATGTTACAGGAAGGAACTGCTAATTACTTCAAAGGACTAATGCTTGTTCTTTGCTATCTGATTGTGGCAGCTAGTTTTTATGTACATGTAGATTCCTATCAGTAG 1344 0.4092 METRVEVEPTLIASRFLDDLSKTCKMGSPNGRSMNKSEDEVPFGPELNFQQSDSTLVDVHGSRSEELQTAHRQTLRGIIYRSIRVVVFSNKLNLLMFFGPLAILLQKLTGHHGWVFALSLLGIMPLAERQLAFYTGDTVGGLLNATFGNATELIISIYALKSGMTRVVQLSLLGSILSNMLLVLGCAFLSGGIVFHKKEQVFNKSMATVNLGLLLMAVMGLLFPAVLHYTHTEVDLGKSELALSRFSSCIMLVAYAAYLFFQLKSQKNLYVSVNEQEGQDGNNANDDDSPDISKWESIIWLSVMTAWISILSEYLVNAIEGASTAWKIPVSFISVILLPLVGNAAEHASAIMFAMKDKLDISLGVAIGSSTQISMFVVPFCVVIGWITGHPMDLNFQLFETAALFLTVIVVAFMLQEGTANYFKGLMLVLCYLIVAASFYVHVDSYQ 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2572g00003 447 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 63 444 IPR004713 GO:0006812|GO:0008324|GO:0016020
Gabi2572g00003 447 FunFam Vacuolar cation/proton exchanger 137 276 - -
Gabi2572g00003 447 Pfam Sodium/calcium exchanger protein 133 263 IPR004837 GO:0016020|GO:0055085
Gabi2572g00003 447 Pfam Sodium/calcium exchanger protein 298 438 IPR004837 GO:0016020|GO:0055085
Gabi2572g00003 447 Gene3D - 135 276 IPR044880 -
Gabi2572g00003 447 Gene3D - 284 441 IPR044880 -
Gabi2572g00003 447 NCBIfam calcium/proton exchanger 95 440 IPR004798 GO:0006816|GO:0015369
Gabi2572g00003 447 FunFam Vacuolar cation/proton exchanger 285 441 - -
Gabi2572g00003 447 NCBIfam calcium/proton exchanger 83 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2572g00003 Gabi-Chr2572 46124 52048 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2572g00003 60 447 Antiporters AT1G55730 72.843 0.0 580
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2572g00003 K07300 - gmx:100799276 755.747