Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2571g00001 ATGTTGAATCATGGGTCAAATGTTTTCGCTGAAGGGGTGGTTTGTTCCGGTGAGGATGAGCTGTATGAGCCGCTATGGAAGGCCTGTGCGGGTCCACTGCCTGTCGATGTTCCTCGTGTTGGCCAGAGGGTCTTCTATTTCCCTCAAGGACACACCGAGCAATTTGAGGTGTGCGAAAATCAAGAACTGAATCAGAGTATTCCTCCGTTGAAACTTCCCACAAAGATCCTTTGTCGCGTCGGGAATGTCCATTTAATGGCTGAACAAGAAACAGATGAGGTTTATGCACAGATTACTTTGGTGCCAGAATCTAATCAAGCTGAGCCTACAAGCCCTGATCCGTGCACTGCTGAACCTCCGAGGGCAACATTTCACTCATTCTGCAAGGTCTTAACTGCTTCGGATAGCAGAAGGCGTGGTAGCTTCTCTGTTCGCATGAAACATGCCACAGAATGCCTTCCTGCTTTGGACATGTCTCAACCAACTCAAGAATTGGTCGCCAAGGATCTTCACGGTTATAAATGGCACTTTAAGCATATATTTAGAGTTCAGCCACGCAGACACTTACTCACGACTGGATGGAGTACTTTTGTGACTTCCAAGAGATTAGTTGCTGGAGATACCTTTGTGTTTTTGAGAGGGGACAACGGGGAATTACGCGTTGGAGTGAGGCGTCTTGCTCGTCAGCCAAGTAGCATGCCGTCATCTGTGATTTCCAGTCAGAGCATGCACCTACGAATTCTAGGAGTTCTTGCAACTGCCTCTCATGCTGTTTCAACTCAGGCTCTTTTTGTAGCATATTATAAGCCAAGGACGAGCCAGTTCATCATAAGCGTGAACAGGTACTTGGAGGCTATCAACAATAAGTTTAGTGTTGGCATGAGGTTCAAGATGAGGTTTGAGGGAGATGATTTCACTGAGACTGACAAAAGATTTTCCGGTACCGTAGTTGGAGTAGAAGATATTTCTCCTTATTGGGTAGATTCAAAATGGCGATCACTTAAGGTTCAATGGGATGAAGCTGCAGCTGTTACAAGACATGATAGGGTTTCACCATGGGAGATAGAACCTTTTGTGGCTTCTGCTTCGACACCCTCGATTCAACCTACAGTTGTAAAGACTAAAAGGCCTCGACCACCCAGTGAAGTTCCAGATGTTGACATAACATCGGCTGATATGAATAGTAAAAGCAACAGCAACACTATATTAAGGGATACAATAGAAGGAAGTTGGCTATCTTCTCCCAATTCTAGTTCTCCTTCTCATTTGAATCAGGACACAACGGATGATAGCGAGAGTGTCTCAGCTTGGCCTGTTTCAAATCCTCAGTCATCTAGATTGAACAACGATCATGTGCTTGTTGACCAAGTTGATAAGGAGAAGAAAGTCGAGACTGCTACAAGTTATCAATTGTTTGGAATCAAGGCTATTGATCATTCCAGGAACTCACCTGCTGTAGAAAAGGCATCAACACATGCAGGAAATGTACCCAGAGTTATTACCACCGAAGGCTATGTCAGCTGTGGAGTCCAGGTTACATGTGCTGACTTAAACAGCGTCCAGTGTTCGAATGTAGAAAGCTGGCTTGAAAGAACAGATAATGAGATAAAGAATTGTGGGCACGACAACTCATATAAGCCATTCCGAGGCAAAGAGAAGATAAGTGATGCAAAATGCTCATGGCCATTATTAACGGACAGTTCTGACAAAAGCACTGACAGAACGACAAATTCATATTCAAACGAGTATTCTGGCCCGTCCTGA 1764 0.4467 MLNHGSNVFAEGVVCSGEDELYEPLWKACAGPLPVDVPRVGQRVFYFPQGHTEQFEVCENQELNQSIPPLKLPTKILCRVGNVHLMAEQETDEVYAQITLVPESNQAEPTSPDPCTAEPPRATFHSFCKVLTASDSRRRGSFSVRMKHATECLPALDMSQPTQELVAKDLHGYKWHFKHIFRVQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGDNGELRVGVRRLARQPSSMPSSVISSQSMHLRILGVLATASHAVSTQALFVAYYKPRTSQFIISVNRYLEAINNKFSVGMRFKMRFEGDDFTETDKRFSGTVVGVEDISPYWVDSKWRSLKVQWDEAAAVTRHDRVSPWEIEPFVASASTPSIQPTVVKTKRPRPPSEVPDVDITSADMNSKSNSNTILRDTIEGSWLSSPNSSSPSHLNQDTTDDSESVSAWPVSNPQSSRLNNDHVLVDQVDKEKKVETATSYQLFGIKAIDHSRNSPAVEKASTHAGNVPRVITTEGYVSCGVQVTCADLNSVQCSNVESWLERTDNEIKNCGHDNSYKPFRGKEKISDAKCSWPLLTDSSDKSTDRTTNSYSNEYSGPS 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2571g00001 587 Gene3D - 289 364 - -
Gabi2571g00001 587 ProSiteProfiles B3 DNA-binding domain profile. 127 227 IPR003340 GO:0003677
Gabi2571g00001 587 MobiDBLite consensus disorder prediction 562 587 - -
Gabi2571g00001 587 Pfam Auxin response factor 254 335 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gabi2571g00001 587 FunFam Auxin response factor 125 227 - -
Gabi2571g00001 587 Gene3D - 124 226 IPR015300 -
Gabi2571g00001 587 MobiDBLite consensus disorder prediction 366 450 - -
Gabi2571g00001 587 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 20 487 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gabi2571g00001 587 FunFam Auxin response factor 289 362 - -
Gabi2571g00001 587 Pfam B3 DNA binding domain 127 225 IPR003340 GO:0003677
Gabi2571g00001 587 SMART B3_2 127 227 IPR003340 GO:0003677
Gabi2571g00001 587 CDD B3_DNA 125 225 IPR003340 GO:0003677
Gabi2571g00001 587 MobiDBLite consensus disorder prediction 388 450 - -
Gabi2571g00001 587 SUPERFAMILY DNA-binding pseudobarrel domain 118 249 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2571g00001 Gabi-Chr2571 93747 103334 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2571g00001 17 498 B3 DNA Binding Superfamily AT4G23980 56.619 6.21e-171 498
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gabi2571g00001 B3 1.1e-20 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2571g00001 K14486 - gmx:100779003 777.319