Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2570g00012 ATGGGCAAAAAGAAAGCAAAGGATCCGCAACAAACCCCTCAAAGCGACTCCGTTTCATCCCCTTCCGGTATTTTCAACGCGCTCTTTGGCAACGGGCCGGAACAGACCACCGCCACCGCTGCTGCCGCTTCTCTGTTTTCCGATTTCAACCCCTTTCGTAGAAAGCCTCAACAACATGCTTCGGTTTCTTACCCAACCATTCCCTCTCAAAGCCCTAACAATGGCGGCTCCGGGAGCCACGATTCCGGCGAAGATAAAAAGAGGAAGAGGAAGAAGAACAAGGAGGAAAGACCCATTCTTGATTCGGATTCCGTAACTGAAGCTTCGGAGAAGAAGAGGAAACGCGGTTCCGATGAAAGGGGAGGGGAAGGGAAAGATCCTAATTTGGGTACGCAAACAAAAAAGGGCAAGGTTGTAATCGAAGGTGAGGAGGGAAAGATGAAGAAGAAGAGGAAAAGGGAAGAGCTTGAGAAAGAGTGGGAGGAGAAGAAGTATGGTGTGGTGGTGGAAGGAGAGGAAGATGAAAAGGAAAGGTTTGGGAATAAAACTGTTGGGAGCAAGCGGAAGATGATAGATAACCCAGCTGATATGTTGGTTTTAAAGGAAGGTTTTGATGACGAGGATAAGCTTTTGAGGACTATTTTTGTTGGGAATTTGCCTCTCAAGTTGAAAAAGAAGACTTTGTTGAAGGAGTTTAAGAAATTTGGTGAGGTTGAGTCAGTGAGGATTCGTTCTGTTCCAATACAAGATACCAAAAAACCTAGGAAGGGAGCCATCCTTTCGAAGAAAATAAATGATTCCGCTGATAGTGTTCACGCATACATTGTTTTCAAGACAGAGGAATCTGCTCAGGCTTCTTTGTCCCACAACATGACTGTGGTTGAAGGAAATCACATTCGTGTTGATAGGGCATGCCCACCCCGCAAGAAACATAAAGGGGAGATTGCTTCGCTTTATGATAACAAGAGAACTGTTTTTGTGGGCAACCTCCCATTTGATGTTAAGGATGAAGAACTATATCAGTTATTTTGTGGTATATCCAACCTGGAATCAAGTATAGAAGCTGTTAGAGTCATTAGAGATCCTCATCTTAATGTTGGAAAGGGTATTGCCTACGTGCTGTTTAAAACAAGGGAAGCTGCTAATTTTGTTGTTAAGAAACGGAGCTTGAAGCTTCGAGACCGAGAGTTGAGAATCTGTCATGCCAAAGCGGATGCCACCCCATCTAAAAAGCCAAACCCATCACCAGCTCCTACCACCCCATCTAAAAGGCCAAACCCATCACCAGCTCCTAGTACCCCTGCAAAGAAGTTGGCTGTGGCTTCACGATCTCCTTCAAACAGTAATAACAGGTCAAACAAAAAAACTAATGCATCTTATCAGGGTCTGCGTGCAACCAAATCTGTTATCAACAAGAAAGTTCATGGAAGAGAAAAACCGAAAGAGCGCATGATGAAAAGGCCAGCAGTAGCTGCGAAAAAGGCTAAAGCAAATTTGTTCAAGGATGGTGGTACACCAAAACAAGCAGGGGTAAAACGCAAGCTTGATAGTCGTACTCCAGATAGCTCCCTACGAAATAAGAAGGCCAAGAAGAATAACAGATAG 1605 0.4455 MGKKKAKDPQQTPQSDSVSSPSGIFNALFGNGPEQTTATAAAASLFSDFNPFRRKPQQHASVSYPTIPSQSPNNGGSGSHDSGEDKKRKRKKNKEERPILDSDSVTEASEKKRKRGSDERGGEGKDPNLGTQTKKGKVVIEGEEGKMKKKRKREELEKEWEEKKYGVVVEGEEDEKERFGNKTVGSKRKMIDNPADMLVLKEGFDDEDKLLRTIFVGNLPLKLKKKTLLKEFKKFGEVESVRIRSVPIQDTKKPRKGAILSKKINDSADSVHAYIVFKTEESAQASLSHNMTVVEGNHIRVDRACPPRKKHKGEIASLYDNKRTVFVGNLPFDVKDEELYQLFCGISNLESSIEAVRVIRDPHLNVGKGIAYVLFKTREAANFVVKKRSLKLRDRELRICHAKADATPSKKPNPSPAPTTPSKRPNPSPAPSTPAKKLAVASRSPSNSNNRSNKKTNASYQGLRATKSVINKKVHGREKPKERMMKRPAVAAKKAKANLFKDGGTPKQAGVKRKLDSRTPDSSLRNKKAKKNNR 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2570g00012 534 MobiDBLite consensus disorder prediction 80 125 - -
Gabi2570g00012 534 MobiDBLite consensus disorder prediction 401 534 - -
Gabi2570g00012 534 SUPERFAMILY RNA-binding domain, RBD 206 312 IPR035979 GO:0003676
Gabi2570g00012 534 MobiDBLite consensus disorder prediction 411 432 - -
Gabi2570g00012 534 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 325 397 IPR000504 GO:0003723
Gabi2570g00012 534 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 214 255 IPR000504 GO:0003723
Gabi2570g00012 534 CDD RRM1_RBM34 212 302 - -
Gabi2570g00012 534 MobiDBLite consensus disorder prediction 1 32 - -
Gabi2570g00012 534 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 212 306 IPR000504 GO:0003723
Gabi2570g00012 534 MobiDBLite consensus disorder prediction 471 489 - -
Gabi2570g00012 534 CDD RRM2_RBM34 324 400 IPR034221 -
Gabi2570g00012 534 MobiDBLite consensus disorder prediction 50 150 - -
Gabi2570g00012 534 SUPERFAMILY RNA-binding domain, RBD 319 414 IPR035979 GO:0003676
Gabi2570g00012 534 MobiDBLite consensus disorder prediction 507 528 - -
Gabi2570g00012 534 Gene3D - 208 312 IPR012677 -
Gabi2570g00012 534 SMART rrm1_1 324 400 IPR000504 GO:0003723
Gabi2570g00012 534 SMART rrm1_1 213 302 IPR000504 GO:0003723
Gabi2570g00012 534 MobiDBLite consensus disorder prediction 11 32 - -
Gabi2570g00012 534 Gene3D - 316 411 IPR012677 -
Gabi2570g00012 534 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 303 478 - -
Gabi2570g00012 534 MobiDBLite consensus disorder prediction 439 466 - -
Gabi2570g00012 534 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 323 404 IPR000504 GO:0003723
Gabi2570g00012 534 MobiDBLite consensus disorder prediction 54 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2570g00012 Gabi-Chr2570 102995 107096 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2570g00012 214 387 Eukaryotic Initiation Factors Gene Family AT1G71770 25.824 9.54e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2570g00012 K14837 - gmx:100784494 650.203