Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2570g00009 ATGGGCAGGTCCCCATGTTGTGACGAGAGAAGTGTAAAGAAAGGGCCATGGACACCAGAAGAAGACGAGAAGCTTATTGATTATGTCAGCAAACATGGCCATGGAAGTTGGGGAACACTTTCAAAACGTGCAGGTCTTAATAGGTGCGGTAAGAGCTGCAGGCTAAGATGGACAAACTATCTGAGGCCTGATATCAAGAGAGGGAAATTCACTGAAGAAGAAGAGCGAATTATCATCAACCTACATTCAGTTCTCGGAAACAAGTGGTCAAAGATTGCAGCCCATCTTCCAGGAAGAACTGATAATGAGATCAAGAATTTCTGGAACACCCTCATAAGGAAAAAGCTTCTCAAGATGGGTATTGATCCAGAAACTCACAAACCAAGGACTGATTTCAATCACCTAATGAATCTTTCTCAGTTGCTTGGGATGTCAAACTTGGGAAATGCTATGAGTACTACTTGGGGCAACCCTCTTGGTTTACATGCAGATGTCACTCAGCTAGCCAATATACAGATGTTACAAAATATGTTGCACATTATGAACAGCAATTCATATGTCAACATGGGTAACCCTTACCTCTTAGGCAATCCCAGCCTCAACCCATTCAATGAATTTCTCAATGGAACAAACACCCTCCAAGCTAAGGAACCTGTTGTCTTGAGTGGTGAAGAATATGCAAACCCTGGTCTATACTCTCAAGCACAAAGTGAGTCCTCTCTGCAGGATATTTCAAAATCATGGGCAGATGCAGAAGGTGGATCTCATCCACAAGATCTTGATTACAACAAAATTAGCAGCACTTTTGAGAATCAAGCAGAAAATCCATTGCCTGCATTAGTTGCTTTCTCTCCAAGAATCAAACAAATGGACAATGGTTATAATAACACAGCTCAAACGTCCACCCAGTCAACTTCCAACACAATCTTTGATGACTGGGAGAAGTTCCTTGATGAAGAAACAAACGGTTCCTACTGGAAAGAGATTCTAGAGTAA 996 0.4187 MGRSPCCDERSVKKGPWTPEEDEKLIDYVSKHGHGSWGTLSKRAGLNRCGKSCRLRWTNYLRPDIKRGKFTEEEERIIINLHSVLGNKWSKIAAHLPGRTDNEIKNFWNTLIRKKLLKMGIDPETHKPRTDFNHLMNLSQLLGMSNLGNAMSTTWGNPLGLHADVTQLANIQMLQNMLHIMNSNSYVNMGNPYLLGNPSLNPFNEFLNGTNTLQAKEPVVLSGEEYANPGLYSQAQSESSLQDISKSWADAEGGSHPQDLDYNKISSTFENQAENPLPALVAFSPRIKQMDNGYNNTAQTSTQSTSNTIFDDWEKFLDEETNGSYWKEILE 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2570g00009 331 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gabi2570g00009 331 CDD SANT 69 112 IPR001005 -
Gabi2570g00009 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gabi2570g00009 331 CDD SANT 16 61 IPR001005 -
Gabi2570g00009 331 PANTHER F14D16.11-RELATED 1 318 - -
Gabi2570g00009 331 SMART sant 13 63 IPR001005 -
Gabi2570g00009 331 SMART sant 66 114 IPR001005 -
Gabi2570g00009 331 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Gabi2570g00009 331 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gabi2570g00009 331 FunFam MYB-related transcription factor 13 66 - -
Gabi2570g00009 331 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gabi2570g00009 331 FunFam Transcription factor MYB39 69 130 - -
Gabi2570g00009 331 Gene3D - 13 66 - -
Gabi2570g00009 331 Gene3D - 68 135 - -
Gabi2570g00009 331 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gabi2570g00009 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2570g00009 Gabi-Chr2570 62288 63511 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2570g00009 1 331 MYB Transcription Factor Family AT5G16770 45.665 3.76e-92 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi2570g00009 Myb_DNA-binding 1.1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2570g00009 K09422 - gmx:778082 514.227