Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2570g00008 ATGTCAGACCGGGGTACTTTCTCCGGCGACTCGGCCATGGATGCTAAGGGAGGAGAGAGAAAAAAGGAGCATAAAGTTCCTTTGTTAAAGCTCTTCTCTTTTGCTGACTTTTATGACTTTGTCTTAATGTTTGTTGGATCTGTTGGGGCATGTATTCACGGTGCTTCTGTTCCCGTTTTCTTTATCTTCTTTGGAAAGTTGATCAATATCATAGGCTTGGCTTATCTTTTCCCCAAGGAAGCTTCTCACCAAGTTGCCAAGTACTCGTTGGATTTTGTGTATCTAAGTATAGCAATATTGTTTTCATCTTGGACAGAGGTGGCTTGTTGGATGCATACTGGGGAACGTCAAGCTGCAAAGATGAGAATGGCTTATTTAAGGTCAATGCTGAATCAAGATATAAGCCTATTTGATACCGAGGCATCAACGGGAGAGGTCATTTCTGCCATCACAAGTGACATTATCATTGTTCAAGATGCACTATCCGAGAAGGTAGGGAACTTCATGCACTACATAAGCCGATTTATAGCTGGCTTTACTATTGGCTTTGTCAGAGTGTGGCAGATAAGTCTAGTGACACTTTCAATTGTCCCCTTGATTGCCCTTGCTGGAGGTCTTTATGCATATGTGACAATTGGGCTTATTGCAAAAGTTCGAAAAGCTTATGTGAGGGCTGGTGAAATTGCTGAAGAGGTGATAGGCAATGTTAGGACGGTACAAGCATTTGCAGGAGAAGAAAGAGCAGTGAGATCATATAAAGAGGCTCTCTTGAAAACTTATGTAAACGGTAGAAAAGCAGGTTTAGCAAAGGGTCTTGGACTTGGTTCAATGCATTGTGTCCTTTTTCTATCGTGGGCTTTGCTTGTTTGGTTCACTAGCGTTGTTGTTCACAAGAATATTGCCAATGGGGGCGAGTCTTTCACTACCATGCTCAATGTCGTCATCTCTGGCCTGTCACTTGGGCAGGCAGCACCAGATATTTCTGCATTTATCCGGGCAAAAGCAGCAGCTTATCCAATTTTTGAGATGATAGAGAGGGACACAGTGAGCAAAAGCAGTTCAAAAACTGGTCGCAAATTAAGCAAATTGGAGGGTCATATTCAGTTTAAGGATGTCTGTTTCAGTTATCCATCTCGTCCAGAAGTAGCAATCTTCAATAACCTCTGTCTTGACATTCCTTCAGGGAAAATTGTTGCCCTTGTGGGAGGAAGTGGTTCTGGAAAGAGCACTGTTATATCATTGATTGAACGCTTTTATGAACCCCTTTCTGGTCAGATACTATTAGATAGGAATGATATCAGGGAACTTGATCTCAAATGGCTAAGGCAGCAAATTGGGCTGGTTAATCAAGAACCTGCCCTTTTTGCAACCAGCATCAAGGAGAACATACTGTATGGAAAAGATGATGCCACATTTGAAGAACTAAAACGTGCTGTGAAGCTTTCAGATGCTCAGTCTTTCATTAACAATCTTCCTGATAGATTAGAAACTCAGGTTGGTGAGAGAGGGATACAATTATCAGGTGGGCAAAAGCAAAGGATTGCATTATCTCGTGCTATCGTGAAGAATCCATCAATCCTTTTGTTGGATGAAGCAACCAGTGCTCTGGATGCGGAGTCTGAGAAGAGTGTACAGGAAGCTCTTGATCGTGTCATGGTTGGTAGAACAACTGTGGTTGTGGCACACAGACTTTCTACAATTAGGAATGCAGATGTGATAGGTGTTGTTCAGGGAGGGAGGATTGTGGAAACTGGTAACCATGAAGAGCTTATTTCCAACCCAACTAGTGTATATGCATCTCTTGTTCAACTCCAAGACGCAACTTCTCTGCAACGCCTCCCCTCAGTTGGTCCTAGCTTGGGACGGCAGTCGAGCATAAACTACTCAAGGGAATTATCCCGCACAACAGCAAGCTTTGGTGGTAGTTTTCGGTCAGATAAAGAATCTATTGGCAAGGTTTGTGCTGATGAAGCAGAAAATGCAAGCAAATCAAAGCGTGTTTCTGCAGCAAGACTATATTCTATGGTTGGTCCTGACTGGTTTTATGGGGTTTTTGGGACCTTCTGTGCATTTGTTGCTGGAGCTCAGATGCCACTTTTTGCGCTTGGAATCTCTCATGCTCTTGTATCGTACTATATGGACTGGGATACAACACGTCATGAAGTCAAAAAAATTGCTTTCCTCTTCTGTGGAGCAGCAGTTATAACCATCACTGTCCATGCAATTGAACATCTTTCTTTTGGAATCATGGGCGAGCGACTTACCCTTCGTGTGAGAGAAATGATGTTTTCTGCTATTTTGAAGAATGAAATTGGCTGGTTTGATGATACAAACAACACAAGTTCTATGCTTTCATCGCGATTAGAGACGGATGCAACTTTATTAAGAAGTATAGTTGTTGATCGTTCTACAATTCTGTTACAGAATGTTGGTCTGGTTGTTACTTCATTTATTATTGCCTTCATCTTGAACTGGAGAATAACGCTTGTTGTCTTGGCCACATATCCTTTGATCATTAGTGGTCACATCAGTGAGAAACTCTTCATGAAAGGTTACGGTGGCAACTTGAGCAAAGCATATCTAAAAGCCAACATGTTGGCTGGGGAGGCTGTGAGCAATATACGCACTGTTGCAGCATTTTGTTCTGAAGATAAGGTCCTTGACCTTTATGCTAATGAGCTTGTTGATCCTTCCAAACGTTCATTTCAACGGGGCCAAATTGCTGGGATATTCTATGGCATGTCCCAGTTCTTTATTTTCTCATCTTATGGCCTTGCCTTGTGGTATGGATCTGTTTTGATGGGAAAGGAGCTTGCTAGCTTTAAATCAGTAATGAAGTCATTTATGGTTTTAATTGTAACAGCACTGGCTATGGGGGAGACTTTGGCACTTGCCCCAGACCTTTTGAAAGGGAATCAAATGGTTGCATCAGTTTTTGAAGTGATGGATAGAAAATCAGGAATAATGGGTGATAATGGAGAAGAGTTGAAGACTGTGGAGGGAACAATTGAGCTCAAAAGAATCCATTTCAGCTACCCTTCAAGGCCGGATGTGATTATTTTCAAGGATTTCAATCTAAGAGTTCCTTCAGGCAAGAGTATTGCCTTAGTGGGGCAAAGTGGTTCTGGTAAAAGCTCTGTGATCTCCCTTATACTCAGATTTTACGATCCAACATCTGGAAGGGTGTTAATTGATGGAAAAGACATCACGAGACTTAATCTGAAATCTCTCAGGAAACATATTGGTCTTGTGCAACAAGAACCGGCTCTTTTTGCAACATCAATTTATGAAAACATTCTTTACGGGAAGGAAGGTGCCTCTGATTCAGAAGTAATTGAAGCAGCTAAGCTTGCCAATGCTCACAACTTCATCAGTGGTCTTCCAGAAGGTTACTCCACCAAAGTTGGTGAGCGAGGAGTGCAACTATCTGGTGGTCAAAGACAAAGGGTAGCCATTGCAAGAGCAGTTTTAAAGAATCCTGAAATATTGCTACTAGATGAAGCCACTAGTGCACTGGATGTGGAGTCAGAGCGTGTGGTGCAGCAAGCTTTGGACAGATTAATGCAGAACAGAACAACAGTTATGGTGGCACATAGACTATCCACTATAAGAAATGCTGACCAAATCTCTGTTTTACAGGATGGAATGATAATTGAGCAAGGGACTCATTCAAGTCTTGTAGAGAATAAAAATGGAGCATACTTTAAATTAGTCAACCTTCAACAACAACAGCATCAACAATAG 3744 0.4196 MSDRGTFSGDSAMDAKGGERKKEHKVPLLKLFSFADFYDFVLMFVGSVGACIHGASVPVFFIFFGKLINIIGLAYLFPKEASHQVAKYSLDFVYLSIAILFSSWTEVACWMHTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIIVQDALSEKVGNFMHYISRFIAGFTIGFVRVWQISLVTLSIVPLIALAGGLYAYVTIGLIAKVRKAYVRAGEIAEEVIGNVRTVQAFAGEERAVRSYKEALLKTYVNGRKAGLAKGLGLGSMHCVLFLSWALLVWFTSVVVHKNIANGGESFTTMLNVVISGLSLGQAAPDISAFIRAKAAAYPIFEMIERDTVSKSSSKTGRKLSKLEGHIQFKDVCFSYPSRPEVAIFNNLCLDIPSGKIVALVGGSGSGKSTVISLIERFYEPLSGQILLDRNDIRELDLKWLRQQIGLVNQEPALFATSIKENILYGKDDATFEELKRAVKLSDAQSFINNLPDRLETQVGERGIQLSGGQKQRIALSRAIVKNPSILLLDEATSALDAESEKSVQEALDRVMVGRTTVVVAHRLSTIRNADVIGVVQGGRIVETGNHEELISNPTSVYASLVQLQDATSLQRLPSVGPSLGRQSSINYSRELSRTTASFGGSFRSDKESIGKVCADEAENASKSKRVSAARLYSMVGPDWFYGVFGTFCAFVAGAQMPLFALGISHALVSYYMDWDTTRHEVKKIAFLFCGAAVITITVHAIEHLSFGIMGERLTLRVREMMFSAILKNEIGWFDDTNNTSSMLSSRLETDATLLRSIVVDRSTILLQNVGLVVTSFIIAFILNWRITLVVLATYPLIISGHISEKLFMKGYGGNLSKAYLKANMLAGEAVSNIRTVAAFCSEDKVLDLYANELVDPSKRSFQRGQIAGIFYGMSQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALAPDLLKGNQMVASVFEVMDRKSGIMGDNGEELKTVEGTIELKRIHFSYPSRPDVIIFKDFNLRVPSGKSIALVGQSGSGKSSVISLILRFYDPTSGRVLIDGKDITRLNLKSLRKHIGLVQQEPALFATSIYENILYGKEGASDSEVIEAAKLANAHNFISGLPEGYSTKVGERGVQLSGGQRQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALDRLMQNRTTVMVAHRLSTIRNADQISVLQDGMIIEQGTHSSLVENKNGAYFKLVNLQQQQHQQ 1247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2570g00008 1247 CDD ABC_MTABC3_MDL1_MDL2 1003 1240 - -
Gabi2570g00008 1247 CDD ABC_6TM_Pgp_ABCB1_D1_like 43 340 - -
Gabi2570g00008 1247 Gene3D - 993 1247 IPR027417 -
Gabi2570g00008 1247 Pfam ABC transporter transmembrane region 44 315 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi2570g00008 1247 Pfam ABC transporter transmembrane region 685 956 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi2570g00008 1247 SUPERFAMILY ABC transporter transmembrane region 30 337 IPR036640 GO:0005524|GO:0016020
Gabi2570g00008 1247 CDD ABC_6TM_Pgp_ABCB1_D2_like 673 988 - -
Gabi2570g00008 1247 CDD ABC_MTABC3_MDL1_MDL2 367 605 - -
Gabi2570g00008 1247 ProSitePatterns ABC transporters family signature. 506 520 IPR017871 GO:0005524|GO:0016887
Gabi2570g00008 1247 Pfam ABC transporter 1022 1170 IPR003439 GO:0005524
Gabi2570g00008 1247 SUPERFAMILY ABC transporter transmembrane region 666 984 IPR036640 GO:0005524|GO:0016020
Gabi2570g00008 1247 Gene3D - 357 606 IPR027417 -
Gabi2570g00008 1247 FunFam ABC transporter B family member 4 357 611 - -
Gabi2570g00008 1247 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1003 1239 IPR003439 GO:0005524
Gabi2570g00008 1247 SMART AAA_5 1030 1222 IPR003593 GO:0016887
Gabi2570g00008 1247 SMART AAA_5 394 595 IPR003593 GO:0016887
Gabi2570g00008 1247 FunFam ABC transporter B family member 2 804 1000 - -
Gabi2570g00008 1247 Gene3D ABC transporter type 1, transmembrane domain 648 992 IPR036640 GO:0005524|GO:0016020
Gabi2570g00008 1247 FunFam ABC transporter B family member 1 30 366 - -
Gabi2570g00008 1247 Gene3D ABC transporter type 1, transmembrane domain 30 608 IPR036640 GO:0005524|GO:0016020
Gabi2570g00008 1247 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 359 605 IPR027417 -
Gabi2570g00008 1247 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 44 332 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi2570g00008 1247 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 994 1241 IPR027417 -
Gabi2570g00008 1247 PANTHER ABC TRANSPORTER B FAMILY 17 605 IPR039421 -
Gabi2570g00008 1247 FunFam ABC transporter B family member 4 993 1246 - -
Gabi2570g00008 1247 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 367 603 IPR003439 GO:0005524
Gabi2570g00008 1247 ProSitePatterns ABC transporters family signature. 1142 1156 IPR017871 GO:0005524|GO:0016887
Gabi2570g00008 1247 Pfam ABC transporter 386 534 IPR003439 GO:0005524
Gabi2570g00008 1247 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 684 970 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2570g00008 Gabi-Chr2570 40573 48933 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2570g00008 26 1247 Calmodulin-binding Proteins AT2G36910 50.040 0.0 1205