Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2570g00007 ATGCAGACAAAAGAAGGAGGAGAGAGAAAAAAGGAGCATAAAGTTCCTTTGTTAAAGCTCTTCTCTTTTGCTGACTTTTATGACTTTGTCTTAATGTTTGTTGGATCTGTTGGGGCATGTATTCACGGTGCTTCTGTTCCCGTTTTCTTTATCTTCTTTGGAAAGTTGATCAATATCATAGGCTTGGCTTATCTTTTCCCCAAGGAAGCTTCTCACCAAGTTGCCAAGTACTCGTTGGATTTTGTGTATCTAAGTATAGCAATATTGTTTTCATCTTGGACAGAGGTGGCTTGTTGGATGCATACTGGGGAACGTCAAGCTGCAAAGATGAGAATGGCTTATTTAAGGTCAATGCTGAATCAAGATATAAGCCTATTTGATACCGAGGCATCAACGGGAGAGGTCATTTCTGCCATCACAAGTGACATTATCATTGTTCAAGATGCACTATCCGAGAAGGTAGGGAACTTCATGCACTACATAAGCCGATTTATAGCTGGCTTTACTATTGGCTTTGTCAGAGTGTGGCAGATAAGTCTAGTGACACTTTCAATTGTCCCCTTGATTGCCCTTGCTGGAGGTCTTTATGCATATGTGACAATTGGGCTTATTGCAAAAGTTCGAAAAGCTTATGTGAGGGCTGGTGAAATTGCTGAAGAGGTGATAGGCAATGTTAGGACGGTACAAGCATTTGCAGGAGAAGAAAGAGCAGTGAGATCATATAAAGAGGCTCTCTTGAAAACTTATGTAAACGGTAGAAAAGCAGGTTTAGCAAAGGGTCTTGGACTTGGTTCAATGCATTGTGTCCTTTTTCTATCGTGGGCTTTGCTTGTTTGGTTCACTAGCGTTGTTGTTCACAAGAATATTGCCAATGGGGGCGAGTCTTTCACTACCATGCTCAATGTCGTCATCTCTGGCCTGTCACTTGGGCAGGCAGCACCAGATATTTCTGCATTTATCCGGGCAAAAGCAGCAGCTTATCCAATTTTTGAGATGATAGAGAGGGACACAGTGAGCAAAAGCAGTTCAAAAACTGGTCGCAAATTAAGCAAATTGGAGGGTCATATTCAGTTTAAGGATGTCTGTTTCAGTTATCCATCTCGTCCAGAAGTAGCAATCTTCAATAACCTCTGTCTTGACATTCCTTCAGGGAAAATTGTTGCCCTTGTGGGAGGAAGTGGTTCTGGAAAGAGCACTGTTATATCATTGATTGAACGCTTTTATGAACCCCTTTCTGGTCAGATACTATTAGATAGGAATGATATCAGGGAACTTGATCTCAAATGGCTAAGGCAGCAAATTGGGCTGGTTAATCAAGAACCTGCCCTTTTTGCAACCAGCATCAAGGAGAACATACTGTATGGAAAAGATGATGCCACATTTGAAGAACTAAAACGTGCTGTGAAGCTTTCAGATGCTCAGTCTTTCATTAACAATCTTCCTGATAGATTAGAAACTCAGGTTGGTGAGAGAGGGATACAATTATCAGGTGGGCAAAAGCAAAGGATTGCATTATCTCGTGCTATCGTGAAGAATCCATCAATCCTTTTGTTGGATGAAGCAACCAGTGCTCTGGATGCGGAGTCTGAGAAGAGTGTACAGGAAGCTCTTGATCGTGTCATGGTTGGTAGAACAACTGTGGTTGTGGCACACAGACTTTCTACAATTAGGAATGCAGATGTGATAGGTGTTGTTCAGGGAGGGAGGATTGTGGAAACTGGTAACCATGAAGAGCTTATTTCCAACCCAACTAGTGTATATGCATCTCTTGTTCAACTCCAAGACGCAACTTCTCTGCAACGCCTCCCCTCAGTTGGTCCTAGCTTGGGACGGCAGTCGAGCATAAACTACTCAAGGGAATTATCCCGCACAACAGCAAGCTTTGGTGGTAGTTTTCGGTCAGATAAAGAATCTATTGGCAAGGTTTGTGCTGATGAAGCAGAAAATGCAAGCAAATCAAAGCGTGTTTCTGCAGCAAGACTATATTCTATGGTTGGTCCTGACTGGTTTTATGGGGTTTTTGGGACCTTCTGTGCATTTGTTGCTGGAGCTCAGATGCCACTTTTTGCGCTTGGAATCTCTCATGCTCTTGTATCGTACTATATGGACTGGGATACAACACGTCATGAAGTCAAAAAAATTGCTTTCCTCTTCTGTGGAGCAGCAGTTATAACCATCACTGTCCATGCAATTGAACATCTTTCTTTTGGAATCATGGGCGAGCGACTTACCCTTCGTGTGAGAGAAATGATGTTTTCTGCTATTTTGAAGAATGAAATTGGCTGGTTTGATGATACAAACAACACAAGTTCTATGCTTTCATCGCGATTAGAGACGGATGCAACTTTATTAAGAAGTATAGTTGTTGATCGTTCTACAATTCTGTTACAGAATGTTGGTCTGGTTGTTACTTCATTTATTATTGCCTTCATCTTGAACTGGAGAATAACGCTTGTTGTCTTGGCCACATATCCTTTGATCATTAGTGGTCACATCAGTGAGAAACTCTTCATGAAAGGTTACGGTGGCAACTTGAGCAAAGCATATCTAAAAGCCAACATGTTGGCTGGGGAGGCTGTGAGCAATATACGCACTGTTGCAGCATTTTGTTCTGAAGATAAGGTCCTTGACCTTTATGCTAATGAGCTTGTTGATCCTTCCAAACGTTCATTTCAACGGGGCCAAATTGCTGGGATATTCTATGGCATGTCCCAGTTCTTTATTTTCTCATCTTATGGCCTTGCCTTGTGGTATGGATCTGTTTTGATGGGAAAGGAGCTTGCTAGCTTTAAATCAGTAATGAAGTCATTTATGGTTTTAATTGTAACAGCACTGGCTATGGGGGAGACTTTGGCACTTGCCCCAGACCTTTTGAAAGGGAATCAAATGGTTGCATCAGTTTTTGAAGTGATGGATAGAAAATCAGGAATAATGGGTGATAATGGAGAAGAGTTGAAGACTGTGGAGGGAACAATTGAGCTCAAAAGAATCCATTTCAGCTACCCTTCAAGGCCGGATGTGATTATTTTCAAGGATTTCAATCTAAGAGTTCCTTCAGGCAAGAGTATTGCCTTAGTGGGGCAAAGTGGTTCTGGTAAAAGCTCTGTGATCTCCCTTATACTCAGATTTTACGATCCAACATCTGGAAGGGTGTTAATTGATGGAAAAGACATCACGAGACTTAATCTGAAATCTCTCAGGAAACATATTGGTCTTGTGCAACAAGAACCGGCTCTTTTTGCAACATCAATTTATGAAAACATTCTTTACGGGAAGGAAGGTGCCTCTGATTCAGAAGTAATTGAAGCAGCTAAGCTTGCCAATGCTCACAACTTCATCAGTGGTCTTCCAGAAGGTTACTCCACCAAAGTTGGTGAGCGAGGAGTGCAACTATCTGGTGGTCAAAGACAAAGGGTAGCCATTGCAAGAGCAGTTTTAAAGAATCCTGAAATATTGCTACTAGATGAAGCCACTAGTGCACTGGATGTGGAGTCAGAGCGTGTGGTGCAGCAAGCTTTGGACAGATTAATGCAGAACAGAACAACAGTTATGGTGGCACATAGACTATCCACTATAAGAAATGCTGACCAAATCTCTGTTTTACAGGATGGAATGATAATTGAGCAAGGGACTCATTCAAGTCTTGTAGAGAATAAAAATGGAGCATACTTTAAATTAGTCAACCTTCAACAACAACAGCATCAACAATAG 3711 0.4171 MQTKEGGERKKEHKVPLLKLFSFADFYDFVLMFVGSVGACIHGASVPVFFIFFGKLINIIGLAYLFPKEASHQVAKYSLDFVYLSIAILFSSWTEVACWMHTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIIVQDALSEKVGNFMHYISRFIAGFTIGFVRVWQISLVTLSIVPLIALAGGLYAYVTIGLIAKVRKAYVRAGEIAEEVIGNVRTVQAFAGEERAVRSYKEALLKTYVNGRKAGLAKGLGLGSMHCVLFLSWALLVWFTSVVVHKNIANGGESFTTMLNVVISGLSLGQAAPDISAFIRAKAAAYPIFEMIERDTVSKSSSKTGRKLSKLEGHIQFKDVCFSYPSRPEVAIFNNLCLDIPSGKIVALVGGSGSGKSTVISLIERFYEPLSGQILLDRNDIRELDLKWLRQQIGLVNQEPALFATSIKENILYGKDDATFEELKRAVKLSDAQSFINNLPDRLETQVGERGIQLSGGQKQRIALSRAIVKNPSILLLDEATSALDAESEKSVQEALDRVMVGRTTVVVAHRLSTIRNADVIGVVQGGRIVETGNHEELISNPTSVYASLVQLQDATSLQRLPSVGPSLGRQSSINYSRELSRTTASFGGSFRSDKESIGKVCADEAENASKSKRVSAARLYSMVGPDWFYGVFGTFCAFVAGAQMPLFALGISHALVSYYMDWDTTRHEVKKIAFLFCGAAVITITVHAIEHLSFGIMGERLTLRVREMMFSAILKNEIGWFDDTNNTSSMLSSRLETDATLLRSIVVDRSTILLQNVGLVVTSFIIAFILNWRITLVVLATYPLIISGHISEKLFMKGYGGNLSKAYLKANMLAGEAVSNIRTVAAFCSEDKVLDLYANELVDPSKRSFQRGQIAGIFYGMSQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALAPDLLKGNQMVASVFEVMDRKSGIMGDNGEELKTVEGTIELKRIHFSYPSRPDVIIFKDFNLRVPSGKSIALVGQSGSGKSSVISLILRFYDPTSGRVLIDGKDITRLNLKSLRKHIGLVQQEPALFATSIYENILYGKEGASDSEVIEAAKLANAHNFISGLPEGYSTKVGERGVQLSGGQRQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALDRLMQNRTTVMVAHRLSTIRNADQISVLQDGMIIEQGTHSSLVENKNGAYFKLVNLQQQQHQQ 1236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2570g00007 1236 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 356 592 IPR003439 GO:0005524
Gabi2570g00007 1236 ProSitePatterns ABC transporters family signature. 495 509 IPR017871 GO:0005524|GO:0016887
Gabi2570g00007 1236 Gene3D ABC transporter type 1, transmembrane domain 794 989 IPR036640 GO:0005524|GO:0016020
Gabi2570g00007 1236 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 673 959 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi2570g00007 1236 CDD ABC_6TM_Pgp_ABCB1_D2_like 662 977 - -
Gabi2570g00007 1236 SUPERFAMILY ABC transporter transmembrane region 655 973 IPR036640 GO:0005524|GO:0016020
Gabi2570g00007 1236 Gene3D ABC transporter type 1, transmembrane domain 19 597 IPR036640 GO:0005524|GO:0016020
Gabi2570g00007 1236 SUPERFAMILY ABC transporter transmembrane region 19 326 IPR036640 GO:0005524|GO:0016020
Gabi2570g00007 1236 CDD ABC_6TM_Pgp_ABCB1_D1_like 32 329 - -
Gabi2570g00007 1236 PANTHER ABC TRANSPORTER B FAMILY 4 594 IPR039421 -
Gabi2570g00007 1236 Gene3D - 346 595 IPR027417 -
Gabi2570g00007 1236 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 348 594 IPR027417 -
Gabi2570g00007 1236 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 33 321 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi2570g00007 1236 CDD ABC_MTABC3_MDL1_MDL2 992 1229 - -
Gabi2570g00007 1236 CDD ABC_MTABC3_MDL1_MDL2 356 594 - -
Gabi2570g00007 1236 Gene3D - 990 1234 IPR027417 -
Gabi2570g00007 1236 Pfam ABC transporter 375 523 IPR003439 GO:0005524
Gabi2570g00007 1236 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 992 1228 IPR003439 GO:0005524
Gabi2570g00007 1236 FunFam ABC transporter B family member 4 346 600 - -
Gabi2570g00007 1236 ProSitePatterns ABC transporters family signature. 1131 1145 IPR017871 GO:0005524|GO:0016887
Gabi2570g00007 1236 FunFam ABC transporter B family member 2 793 989 - -
Gabi2570g00007 1236 Coils Coil 1226 1236 - -
Gabi2570g00007 1236 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 983 1230 IPR027417 -
Gabi2570g00007 1236 SMART AAA_5 1019 1211 IPR003593 GO:0016887
Gabi2570g00007 1236 SMART AAA_5 383 584 IPR003593 GO:0016887
Gabi2570g00007 1236 Pfam ABC transporter transmembrane region 33 304 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi2570g00007 1236 Pfam ABC transporter transmembrane region 674 945 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi2570g00007 1236 FunFam ABC transporter B family member 1 19 355 - -
Gabi2570g00007 1236 FunFam ABC transporter B family member 4 982 1235 - -
Gabi2570g00007 1236 Pfam ABC transporter 1011 1159 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2570g00007 Gabi-Chr2570 39626 48933 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2570g00007 15 1236 Calmodulin-binding Proteins AT2G36910 50.040 0.0 1206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2570g00007 K05658 - gmx:100819045 2221.05