Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2570g00002 ATGAGAGGGAAACAGAGACAGCACCGTCAGCGTGGTGCAGCTGCAGCGGAAGACGAGTCAATCACTGCAAACCTTTCTTCTTCTCCTTCTCCTTCGCAAGGTTACCACCAGTACCACAACCATAATTCGAGGAATCAAGGTCAACGACAACACCCCGCCAAATTGAAATTCCGCATTGTCAACAAGTCAGAACAGGTGTCTTCTTTTGATTCTGATTCTGTTATGGTTGGCGTTGATCATTTACGCCAACAAGTTTCCCTTGACCATGACGATTCTGATGTCACCGTCACACTCCAAAATCACCAAAAAGAGAACATTGATGCTGAAACCGATCCTTCAAGCAAGGCTATGGAAGGGGATACTAATGATAATGATAAAGATAAAGATGTTATGGGTAGGCTTGATAAGTTAATCAGTGATATGGAAGAACCTGAATTTTCCGACGAGCAGATCAGAATCAATGACCAATTGCAGCAAGATGAGTTACTTGTGGTTGAGTCAATTTATGGAGAAAACGTTTTCAGCCTCGAGAGATGGAAAGGCCTGCGTTGTTTTCAGATACACATATACATTGATGTTTTGGGTGAAATTGCCATTACTGCTAAGCTGAACTCTTTTAATGAACTTGAGACAGTAAGCAGCAATTCGGATGGCTTCTTATACTCTTTCAAAGTCCAATATCTTCCACCCATTGTTTTGACGTGTTTATTGCCTGAGTCATACCCAAGCCACCATCCACCTTTGTTTACAATCTCTGTTCAGTGGTTGGAAACCAAAAAGATTTCCAGTCTATGCTCCAAATTGGATTCAATATGGGCAGAACAGCATGGGCAGGAAGTAATTTACCATTGGGTAGAATGGTTACATGGTTCTTCTCTTTCTCATCTGGGATTTGATAAGGAAATTACACTTGGTCCTTATGGCATGAATCGTATTGTAGATGAGCGTGCTGTTTCAGGGATTGTTTCTATTGATGTTGATATTCCTTTCTTACGAAATTACAACAATGAGAGACACCATGAGAACTTCTTCAAAGAATTGCATGAATGTTGCATTTGCTATAGTGAATATGCAGGCTCTGAGTTTGTCCGGTTACCATGTGAGCATTTTTTTTGCCTCAAATGCTTGCAGACCTTTGCCCAGATACATGTAAAAGAAGGCACCATTAGCAATCTTCAATGTCCAGATGCAAAATGTGCGGTTATGATTCCACCTGGCCTTTTAAAACACTTACTGGGTGACAAAGATTATGAACGCTGGGAATCCATGATGTTGGAGAAAACACTTGCATCAATGTCTGATGTTGTTTATTGCCCAAGATGTGAAACACCTTGTATAGAGGATGAAGACCAGCATGCTCAATGCCCGAAATGCTTTTTTAGCTTTTGTACCCTTTGCAGGGAACGACGCCATGTTGGCATAGCATGCATGACACTAGATATGAAGCTTCAGATTTTGCAGGACCGTCAAAATTCGTCTCAATTAAAGGATGATCAAAGGCATAGGGAACTTGAAAAGATCAATGAAATGCTCAGTATGAAAGAAATTCATCGTGATTCCAAGCTGTGCCCTTCTTGTGACATGGCCATTTCTCGAACTGAAGGCTGTAACAAAATGAAGTGCAGTAATTGTGAACAATATTTCTGTTACCGCTGCAACAAAGCAATTGATGCATCGGATCCATATGGACATTTCAGGGATGGGTCGTGTGAATTGTTCCCACGAGAAATGATTGAGACCTGGCAAGAGCGCGTAAATCATCGCCAGGTAGTAGGACAAATACAGGCTGAACTCTTTCCTCAACGTGGTCTGGCATGTCCTAGTTGTCGTCAATTTAATGCCAAGGTTGGGAACAATAATCACATGTTTTGCTGGGCTTGCCAAAGCCATTACTGCTACTTATGCAAAGAAATTGTCAGGCGTGGCAGTAAGCATTATGGACCAAAGGGCTGCAAACAGCACAGCGAGGGATAG 1974 0.4195 MRGKQRQHRQRGAAAAEDESITANLSSSPSPSQGYHQYHNHNSRNQGQRQHPAKLKFRIVNKSEQVSSFDSDSVMVGVDHLRQQVSLDHDDSDVTVTLQNHQKENIDAETDPSSKAMEGDTNDNDKDKDVMGRLDKLISDMEEPEFSDEQIRINDQLQQDELLVVESIYGENVFSLERWKGLRCFQIHIYIDVLGEIAITAKLNSFNELETVSSNSDGFLYSFKVQYLPPIVLTCLLPESYPSHHPPLFTISVQWLETKKISSLCSKLDSIWAEQHGQEVIYHWVEWLHGSSLSHLGFDKEITLGPYGMNRIVDERAVSGIVSIDVDIPFLRNYNNERHHENFFKELHECCICYSEYAGSEFVRLPCEHFFCLKCLQTFAQIHVKEGTISNLQCPDAKCAVMIPPGLLKHLLGDKDYERWESMMLEKTLASMSDVVYCPRCETPCIEDEDQHAQCPKCFFSFCTLCRERRHVGIACMTLDMKLQILQDRQNSSQLKDDQRHRELEKINEMLSMKEIHRDSKLCPSCDMAISRTEGCNKMKCSNCEQYFCYRCNKAIDASDPYGHFRDGSCELFPREMIETWQERVNHRQVVGQIQAELFPQRGLACPSCRQFNAKVGNNNHMFCWACQSHYCYLCKEIVRRGSKHYGPKGCKQHSEG 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2570g00002 657 SUPERFAMILY UBC-like 155 289 IPR016135 -
Gabi2570g00002 657 Pfam IBR domain, a half RING-finger domain 418 476 IPR002867 GO:0008270
Gabi2570g00002 657 Pfam IBR domain, a half RING-finger domain 513 556 IPR002867 GO:0008270
Gabi2570g00002 657 MobiDBLite consensus disorder prediction 99 129 - -
Gabi2570g00002 657 FunFam RBR-type E3 ubiquitin transferase 491 600 - -
Gabi2570g00002 657 Gene3D Ubiquitin Conjugating Enzyme 147 296 IPR016135 -
Gabi2570g00002 657 FunFam RBR-type E3 ubiquitin transferase 345 429 - -
Gabi2570g00002 657 SMART ibrneu5 418 476 IPR002867 GO:0008270
Gabi2570g00002 657 SMART ibrneu5 505 570 IPR002867 GO:0008270
Gabi2570g00002 657 MobiDBLite consensus disorder prediction 104 129 - -
Gabi2570g00002 657 SUPERFAMILY RING/U-box 418 481 - -
Gabi2570g00002 657 CDD BRcat_RBR_RNF14 429 480 - -
Gabi2570g00002 657 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 345 433 IPR013083 -
Gabi2570g00002 657 ProSiteProfiles Zinc finger RING-type profile. 350 398 IPR001841 -
Gabi2570g00002 657 SUPERFAMILY RING/U-box 345 429 - -
Gabi2570g00002 657 ProSitePatterns Zinc finger RING-type signature. 367 376 IPR017907 -
Gabi2570g00002 657 SUPERFAMILY RING/U-box 510 565 - -
Gabi2570g00002 657 Pfam RWD domain 156 289 IPR006575 GO:0005515
Gabi2570g00002 657 ProSiteProfiles TRIAD supradomain profile. 346 576 IPR044066 -
Gabi2570g00002 657 SMART ring_2 350 397 IPR001841 -
Gabi2570g00002 657 SMART ring_2 606 635 IPR001841 -
Gabi2570g00002 657 SMART ring_2 438 526 IPR001841 -
Gabi2570g00002 657 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 183 564 IPR031127 GO:0004842|GO:0016567
Gabi2570g00002 657 SUPERFAMILY RING/U-box 603 654 - -
Gabi2570g00002 657 SMART RWD2001b 160 295 IPR006575 GO:0005515
Gabi2570g00002 657 CDD Rcat_RBR_RNF14 508 573 IPR047548 GO:0008270
Gabi2570g00002 657 MobiDBLite consensus disorder prediction 20 50 - -
Gabi2570g00002 657 MobiDBLite consensus disorder prediction 1 51 - -
Gabi2570g00002 657 ProSiteProfiles RWD domain profile. 160 295 IPR006575 GO:0005515
Gabi2570g00002 657 CDD RING-HC_ITT1-like 345 403 - -
Gabi2570g00002 657 Gene3D - 492 599 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2570g00002 349 582 ARIADNE family AT2G31780 23.048 1.41e-14 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2570g00002 K11971 - gmx:100500662 987.638