Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2570g00001 ATGGACACACCAAAGAGGAACCAAATGAACCCTCCCTCCCCTAACTTAGAGGATTCACCTGTGTTCAACTATATCAATAATTTATCTCCTTTGAAGCCCCTTAAGTCTCTTAACAATACTCAGACTTTCAATTCACTCATCTTTTCATCCCCTCCTCGTGTTTTCGCATCACCCCATGTTAGCTGTTTCAACGCATTTGGCACATCAAAGGTTTCTTCTGAAGATGGAAATGATGTTTACTCAAGTGATCTGGCTCTTGCAGATTCTACTCATGCACATCATTGCTCAAGAGAATTGTATGAAATTACCACCAATAATGATGGGATAATGCACGTTGATGATTCAGTTGCTTCTGATTTTGAACTTGATATCCAAGATCATTGTTTTGAGCCAATAGCAGCCACAGTCACAGACCATACACATCAGGACAATCTTGCCAATGTTGCTTTGATGATGAGCAATCCAAATGAGAAGACAAATGATGAGGTAGGAAAGGGAAATTTATGTGTATTATATATTTTACAGCTAGCTAGACTTTGGTTAAGCTTGTTTTGCACCATGCTTCATGGATGTATAGACTTTGAAGTGGCCAGTGAGCAAAGTAATAAGAATACAGATGAGAATTCAAACACTACATCACAGTCTGTTGAGAAGAATGTTACTAATGAAAACCATCTTCTTCTTCCTACAAATTGCAATGGGAATTCACAAAGTTTCACTTTGCCAGAAATTAGTTCACACTTGAACACACTCCCAAGCTTAAAAAATTACAAAGGTTTCACTTCTTCCTTCAACCTCTCTTTAAGCCAAGAACATCAGCATTCACCATTGGTATCTCAATCATCTGAAAGAGAATTGGATCCACCAGAGAATCAAGTTCAACCTGCAGAAGAAGATTTCAATCAGAGCAGCTCCAACAAGAAAAGGCGAAAAATGGAAGAAACTGATCAGGGATGCAAACGTTGCAATTGCAAGAAATCAAAATGTTTGAAGCTTTATTGTGAGTGTTTTGCTTCTGGGGTCTATTGCTTAGAACCTTGTGGCTGTAAGGATTGCTTCAACAAACCAATTCATGAAGATACTCTTGTTGTATCTCGAAAGAAGATTGAATCTCAAAACCCTAATGCATTTGATCCTAAAGTCATTGGAACCGGGGATGATGATCAGAAAAATACTCCAGCATCAGGTTCAGCTCGACATAAAAGAGGATGCAACTGCAAGAAATCAAGTTGCTTGAAGAAATATTGTGAATGTTTTCAGAATGGTGTTGGTTGTTCTATTAATTGCAGATGCAAAGGTTGCAAGAACACATATGGTAGAAAGAATATAAAGGATGGTTCTGCTCCAATAGGAATAGAAGCTGATACAGAAGAACCACAAACATGTGAAAACATGCCAG 1399 0.3817 MDTPKRNQMNPPSPNLEDSPVFNYINNLSPLKPLKSLNNTQTFNSLIFSSPPRVFASPHVSCFNAFGTSKVSSEDGNDVYSSDLALADSTHAHHCSRELYEITTNNDGIMHVDDSVASDFELDIQDHCFEPIAATVTDHTHQDNLANVALMMSNPNEKTNDEVGKGNLCVLYILQLARLWLSLFCTMLHGCIDFEVASEQSNKNTDENSNTTSQSVEKNVTNENHLLLPTNCNGNSQSFTLPEISSHLNTLPSLKNYKGFTSSFNLSLSQEHQHSPLVSQSSERELDPPENQVQPAEEDFNQSSSNKKRRKMEETDQGCKRCNCKKSKCLKLYCECFASGVYCLEPCGCKDCFNKPIHEDTLVVSRKKIESQNPNAFDPKVIGTGDDDQKNTPASGSARHKRGCNCKKSSCLKKYCECFQNGVGCSINCRCKGCKNTYGRKNIKDGSAPIGIEADTEEPQTCENMP 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2570g00001 466 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 132 IPR044522 GO:0003700
Gabi2570g00001 466 MobiDBLite consensus disorder prediction 1 20 - -
Gabi2570g00001 466 MobiDBLite consensus disorder prediction 274 310 - -
Gabi2570g00001 466 MobiDBLite consensus disorder prediction 374 398 - -
Gabi2570g00001 466 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 401 437 IPR005172 -
Gabi2570g00001 466 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 320 355 IPR005172 -
Gabi2570g00001 466 MobiDBLite consensus disorder prediction 274 288 - -
Gabi2570g00001 466 SMART CXC_2 317 358 IPR033467 -
Gabi2570g00001 466 SMART CXC_2 399 440 IPR033467 -
Gabi2570g00001 466 ProSiteProfiles CRC domain profile. 318 439 IPR005172 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2570g00001 Gabi-Chr2570 1708 3861 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2570g00001 16 448 CPP Transcription Factor Family AT4G14770 39.286 1.42e-86 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Gabi2570g00001 TCR 5.3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2570g00001 - - gmx:100804447 387.111