Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2568g00005 ATGGCTCCTCTATTCGTCAAGCTGCAAGTACTTTTTGTTTTCACTTGCATATTTCATGCAGCAACAGTAACATGTACACACTACCGCGACAACACCCTCAAAATATTGTCTTCCACAAACTCCTCCAACCAGAACCACAGTTGGGTCGGACCCATCGGCCACCGTGTAATAACCGTTGACCTTAACGGCGGTGGCCACTTCCGTTCCGTTCAAGACGCCGTCAATGCTGTCCCAGACAACAATAGAATGAATGTCCTTATTCAAATCAGCGCCGGATGCTACGTGGAGAAGGTGATGGTGCCCGTTTCGAAACCTTACATAACGTTTCAAGGAGCGGGTAGAGAAGTGACGGTGATGGAATGGCATGACAGAGCAAGTGATCCTGGTCCCAATGGACAACAATTGCGTACTTACAGAACAGCTTCTGTTACTGTTTTTGCTAACTACTTTTCTGCTAGGAATATCAGCTTCAAGAACACAGCGCCAGCACCAATGCCGGGGATGCAGGGGTGGCAAGCGGCGGCGTTTAGAATATCAGGGGACAAAGCATACTTCTCAGGCTGTGGATTCTACGGTGCACAAGATACACTTTGTGATGACGCTGGCAGGCATTACTTCAAGGAATGCTATATCGAGGGTTCCATTGATTTCATTTTTGGTAATGGCAGGTCCATGTACAAGGATTGCGAGCTACACTCAATAGCAACGAGGTTCGGTTCCATAGCAGCCCAGGATAGGAAATACCCATACGAGAAGACAGGCTTCGCATTCGTACGATGCAAGGTTACGGGTACAGGCCCACTGTATGTGGGGCGAGCAATGGGCCAATACTCGAGAATTGTGTACTCGTACACATATTTCGGTGATGTAGTTGCACACGGTGGTTGGGATGATTGGGACCATGCTCACAACAAGAACAAGACTGTGTTCTTCGGAGTGTACAAGTGTTGGGGACCAGGAGCTGAGGCAGTACGTGGAGTCTCATGGGCCAGAGAGTTGGATTTCGAATCAGCACATCCATTTCTAGTCAAGAGCTTCGTCAATGGGAGACACTGGATCGCACCCTCTGATGCTTAG 1077 0.4875 MAPLFVKLQVLFVFTCIFHAATVTCTHYRDNTLKILSSTNSSNQNHSWVGPIGHRVITVDLNGGGHFRSVQDAVNAVPDNNRMNVLIQISAGCYVEKVMVPVSKPYITFQGAGREVTVMEWHDRASDPGPNGQQLRTYRTASVTVFANYFSARNISFKNTAPAPMPGMQGWQAAAFRISGDKAYFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCELHSIATRFGSIAAQDRKYPYEKTGFAFVRCKVTGTGPLYVGRAMGQYSRIVYSYTYFGDVVAHGGWDDWDHAHNKNKTVFFGVYKCWGPGAEAVRGVSWARELDFESAHPFLVKSFVNGRHWIAPSDA 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2568g00005 358 SUPERFAMILY Pectin lyase-like 54 355 IPR011050 -
Gabi2568g00005 358 Pfam Pectinesterase 57 349 IPR000070 GO:0030599|GO:0042545
Gabi2568g00005 358 ProSitePatterns Pectinesterase signature 2. 211 220 IPR033131 -
Gabi2568g00005 358 Gene3D - 53 357 IPR012334 -
Gabi2568g00005 358 FunFam Pectinesterase 52 355 - -
Gabi2568g00005 358 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 49 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2568g00005 Gabi-Chr2568 58247 61265 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2568g00005 1 358 Carbohydrate Esterase AT5G47500 71.625 0.0 542
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2568g00005 - - gmx:100816190 672.93