Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2568g00002 ATGGAGAGGCACAAATGCAAGCTTTGCTTCAGGACATTCGCCAATGGCAGAGCACTAGGTGGCCACATGAAGGCTCACATGGCCACCCTTCCCCTTCCTCCGAAGCCTGAACCTCTCTATGATGATTCTGCTTCCTTGTCGTTTTCGTCCTCAGAAGACGAAGAACAAGAAGAAGCACTGTCACACAGAGAATCGGATGAAAAGGCTCTGATTTATGGGTTGAGAGAGAATCCCAAGAAAAGTTTCAGGCTTGCAGATCCTGAGTTTTCTTTCCCAACTGATACTGGTGGTTCTGTTGTTGTCCAAGACAGAGAGAGCGAGACCGAGTCAAAGAACCCAACTCGCAGACGATCCAAGCGAACCCGAAAAATCAATCTCGGCCAGAATTTGGAACCCAAGAAGGCTAAACTGAGTTTCATGGAGTCACCACCACCACCACCACCGATGGAGCCTGAACCGGTGAGTTCTGTTTCTGACGCTTCCCCAGATGAAGATGTTGCCATGTGCCTCATGATGTTGTCGAGGGACCAATGGAAGAGGAAGAGGAATATTGTGGAAGAAGAAGAAGAAGAAGAAGTTCAGAGATCAGTTGAAAAGTCAAAGGGATTGGAAGAGGTAAAGTTAAGAAGAATTAAGGGGAAGCAGCAGTGTCAGAAATGTGGGAAAACATTTCGATCTTCTCGGGCATTGGGAAGTCACAAAAGCATATGTCTTCGTGATGAAGCAGAGGCTGCAAGTGCAGGTAATGATAAAATCTTTGAATGCCCATTTTGTTATAAGGTGTTTGGGTCAGGTCAAGCACTTGGTGGCCACAAGAGATCTCACATCGTTGCATCTTCATCCTCAACTGCCAATGATTCTACTAGATTGAAAAAGAGCTTTATAGATCTCAACTTGCCAGCTCCAGCAGAAGATTATGATGATGACCTTAGTGCTGTTTCTGATGCCTAA 951 0.4585 MERHKCKLCFRTFANGRALGGHMKAHMATLPLPPKPEPLYDDSASLSFSSSEDEEQEEALSHRESDEKALIYGLRENPKKSFRLADPEFSFPTDTGGSVVVQDRESETESKNPTRRRSKRTRKINLGQNLEPKKAKLSFMESPPPPPPMEPEPVSSVSDASPDEDVAMCLMMLSRDQWKRKRNIVEEEEEEEVQRSVEKSKGLEEVKLRRIKGKQQCQKCGKTFRSSRALGSHKSICLRDEAEAASAGNDKIFECPFCYKVFGSGQALGGHKRSHIVASSSSTANDSTRLKKSFIDLNLPAPAEDYDDDLSAVSDA 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2568g00002 316 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Gabi2568g00002 316 Gene3D Classic Zinc Finger 213 275 - -
Gabi2568g00002 316 MobiDBLite consensus disorder prediction 32 162 - -
Gabi2568g00002 316 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Gabi2568g00002 316 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 316 IPR044303 GO:0006355
Gabi2568g00002 316 ProSitePatterns Zinc finger C2H2 type domain signature. 255 275 IPR013087 -
Gabi2568g00002 316 MobiDBLite consensus disorder prediction 139 153 - -
Gabi2568g00002 316 SMART c2h2final6 253 275 IPR013087 -
Gabi2568g00002 316 SMART c2h2final6 4 26 IPR013087 -
Gabi2568g00002 316 SMART c2h2final6 215 235 IPR013087 -
Gabi2568g00002 316 ProSiteProfiles Zinc finger C2H2 type domain profile. 253 275 IPR013087 -
Gabi2568g00002 316 SUPERFAMILY beta-beta-alpha zinc fingers 216 275 IPR036236 -
Gabi2568g00002 316 MobiDBLite consensus disorder prediction 55 83 - -
Gabi2568g00002 316 Pfam C2H2-type zinc finger 253 275 - -
Gabi2568g00002 316 Pfam C2H2-type zinc finger 217 234 - -
Gabi2568g00002 316 Pfam C2H2-type zinc finger 3 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2568g00002 Gabi-Chr2568 24251 25228 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2568g00002 1 313 C2H2 Transcription Factor Family AT3G60580 36.418 3.50e-52 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi2568g00002 zf-C2H2_6 2.9e-06 CL0361