Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2565g00002 ATGTCCCCTAACCTTTGCGTTTCCCACATTCCCAAATGGAACACTTTCTACAACAAACCCCAAACCCACTTTCTCTTCGGGCGCTCCAAAAGCTTCCGGGTCGTAACCCCCGAAACCCGTTTCCGACTCGCCGTGTCAGAGAACGAGGAAGCTGTTTCTGGGTTCCAAAAGCTTCTCGGAAAACGGGTCGGGTTCGTGGCGTCCATTTTACCCGGTGGCAGCTGGTGGACCTTATCGGAGCACCGGGAAGAAGACGCGGAGCAGCCGACGGCGGTGATGCTCGCTCTCCGGCGAATGTGGGAATTAGTCGCCGATAAGCGATGGGTTGCGATTGTGGCCTTCGGGTCCCTTGCTGTCGCTGCTCTATCAGAAATAACCATGCCGAGTATATTGGCGGCATCAATATTTTCAGCTGAGAGTGGTGAGACCGTGGCGTTTTCAAGGAATGCATTCTTTTTGGTTCTTCTGTGTTTCACTTCAGGGATATGCAGGCTTGCAGCAGATTGTCAACGACTATCCCATGTTATAGGAAATGATCTACATTTGATATTACGCAACACATTGCAGGGAACAGGAGCAATAATAAATTTGCTGACTTTATCTTGGCCATTGGCATCATCTGCCTTGGTGATTTGTTCTATGTTATCTGCAATTTTCGTGGTTTATGGCCAATATCAAAGAAAAGCAGCAAAACTAACCCAAGATTTCACAGCTTGTGCCAATGACGTAGCCCAGGAAACAATTTCTTCAATAAGAATTGTTCGAGCTTATGGAGCAGGAAAAAAAGAATTTGGAAGGTACAAGCAATGGCTACAGAGATTAGCATATATAAACCGTCGAGAGAGCGTTGCTTATGGGTTCTGGAACTTGAGCTTTAACACCTTATACCGTTCAACTCAGATATTTGCAGTGCTGTTAGGAGGGATGTCTGTTCTTGGTTGTTGTGTAACTGTGGAGCAACTTACTAAGTATGTATTGTACTGCGAGTGGTTGATTTATGCTACTTGGAGGGTGACAAACAGTTTATCATCATTATTGCAGTCCATTGGAGCTTCTGAAAAAACTTTCCAACTGATGAATCTTTTGCCCAGTGACCAATTTTTAGCTAAAGGAGTGAAGTTGCAGAGGTTAATGGGGCATATTCAGTTTGTAAATGTATCATTTCATTATCCTGCAAGGATGATGATGCCTGTTCTAGAACACTTAAACTTCACTGTAGAAGCAAATCAAGTCATTGCCATAGTTGGTCTGAGTGGTAGTGGAAAGAGCACTTTACTCAACCTTTTACTTCGTCTCTATGAGCCTAGTAGTGGTCAGATATATATTGATGGATTCCCTCTTACAGAGTTGGATATCAGATGGCTGAGGCAGAACATCGGATATGTTGCGCAGGAACCCCATCTCTTTAACATGGACATCAAGTCAAATATAGAATATGGTTGCCCTAGGAAAATAAAACAAGAAGATATCGAACTGGCAGCAAAACAGGCCTCTGCCCATGACTTTATTTCTTCACTTCCTAATGGCTATGAAACCCTCGTGGATGATAATGCACTTAGTGGGGGACAAAAGCAACGGATTGCCATCGCCAGGGCCATTCTTAGGGACCCAGTGATTATGATACTTGATGAAGCAACCAGTGCTCTAGATGCTGAGAGTGAGCATGATATCAAGGAGGTGCTGTATGCATTAAAAGATGAATCTAAATCAAGAACCATCATTATCATAGCACATAGGCTTTCTACTATAAAAGCTGCTGACAGGATATTTGTTATGGATGATGGTCGAATCATTGAGATGGGAAACCATGATGAACTTCTGCTCAAGGATGGACTCTATGCAAAATTAAATAAAATTCAAACAGATATTTTGACTTGA 1878 0.4334 MSPNLCVSHIPKWNTFYNKPQTHFLFGRSKSFRVVTPETRFRLAVSENEEAVSGFQKLLGKRVGFVASILPGGSWWTLSEHREEDAEQPTAVMLALRRMWELVADKRWVAIVAFGSLAVAALSEITMPSILAASIFSAESGETVAFSRNAFFLVLLCFTSGICRLAADCQRLSHVIGNDLHLILRNTLQGTGAIINLLTLSWPLASSALVICSMLSAIFVVYGQYQRKAAKLTQDFTACANDVAQETISSIRIVRAYGAGKKEFGRYKQWLQRLAYINRRESVAYGFWNLSFNTLYRSTQIFAVLLGGMSVLGCCVTVEQLTKYVLYCEWLIYATWRVTNSLSSLLQSIGASEKTFQLMNLLPSDQFLAKGVKLQRLMGHIQFVNVSFHYPARMMMPVLEHLNFTVEANQVIAIVGLSGSGKSTLLNLLLRLYEPSSGQIYIDGFPLTELDIRWLRQNIGYVAQEPHLFNMDIKSNIEYGCPRKIKQEDIELAAKQASAHDFISSLPNGYETLVDDNALSGGQKQRIAIARAILRDPVIMILDEATSALDAESEHDIKEVLYALKDESKSRTIIIIAHRLSTIKAADRIFVMDDGRIIEMGNHDELLLKDGLYAKLNKIQTDILT 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2565g00002 625 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 381 619 IPR003439 GO:0005524
Gabi2565g00002 625 SMART AAA_5 408 596 IPR003593 GO:0016887
Gabi2565g00002 625 Pfam ABC transporter 399 547 IPR003439 GO:0005524
Gabi2565g00002 625 PANTHER ABC TRANSPORTER B FAMILY 164 617 IPR039421 -
Gabi2565g00002 625 Pfam ABC transporter transmembrane region 164 327 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi2565g00002 625 FunFam Multidrug ABC transporter ATP-binding protein 373 623 - -
Gabi2565g00002 625 SUPERFAMILY ABC transporter transmembrane region 97 363 IPR036640 GO:0005524|GO:0016020
Gabi2565g00002 625 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 373 620 IPR027417 -
Gabi2565g00002 625 Gene3D ABC transporter type 1, transmembrane domain 163 378 IPR036640 GO:0005524|GO:0016020
Gabi2565g00002 625 ProSitePatterns ABC transporters family signature. 519 533 IPR017871 GO:0005524|GO:0016887
Gabi2565g00002 625 Gene3D - 379 621 IPR027417 -
Gabi2565g00002 625 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 164 347 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2565g00002 Gabi-Chr2565 24068 62098 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2565g00002 172 620 Calmodulin-binding Proteins AT2G36910 34.937 1.34e-70 246