Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2559g00018 ATGGATGGGGATCACAACACTGTTTCCATGGTTAGCAAAAAGAAGAAGAACAACAACAATGGCTCTATGAGGTCCATTTTCATGCATGCTGATGGCCTAGACTGGTTTTTCATGGTTTTAGGTGTCATTGGGGCCATTGGTGATGGCATAGGTACCCCTTTGGTGTTGTATGTCACTAGCCATATTATGAACAATTTAGGCACTTTTTCTAGCAATGGAGGAAACACTTTTATCCATGACATCAATAAGAATGCACTGACTTTGGTATATATGGCTTGTGGGTCTTTTGTTGCTTGCTTCCTTGAAGGTTATTGTTGGACAAGAACAGGTGAAAGACAAGCTACGAGAATGAGAGCAAGGTACTTAAAAGCAGTGCTGAGACAAGAAGTTGCATACTTTGATTTGCATGTCACAAGCACTTCCGAGGTCATCATCAGTGTCTCTAGTGACAGCCTCGTAATTCAAGATGTTCTTAGTGAAAAGGTTCCAAATTTTTTGATGAATGCCTCTATGTTTGTTGGGAGCTACATAGTGGCTTTTGCATTATTATGGAGATTTGCCATAGTGGGGTTCCCTTTTGTGGTTCTACTTGTGATCCCTGGTTTAATTTATGGAAGGACTTTGATGGGGTTGGCTAGAAAGATCAGTAAAGAGTATAATCAAGCTGGTACAATAGCAGAACAAGCAATATCTTCCATCAGAACTGTGTATTCCTTTGTTGGGGAAAGCAAGACCATAGTTGCTTTCTCTGATGCTCTTGAAGGTTCAGTTAAGTTGGGATTGAAACAAGGCTTAGCTAAAGGCTTAGCCATTGGAAGCAATGGTGTTGTCTTTGCCATCTGGTCTTTCATGTCCTATTATGGTAGTAAATTGGTCATGTACCATGGTGCTAAAGGTGGAACTGTATTTGCAGTTGGAGCATCCATAGCACTTGGTGGATTAGCATTAGGTGCTGGTTTATCCAATGTGAAGTACTTTTCAGAGGCTAGTACTGCAGGAGAACGCATAATGGAAGTGATAAAAAGGGTTCCTAAGATTGATTCCGAGAACATGGCTGGGGAGATTCTGGAGAATGTTTCAGGGGAAGTGGAATTTTATAATGTTGAATTTGTGTACCCTTCAAGGCCAGATAGCATTATATTGAAAGATTTTTGCCTTAAGGTTCCAGCAGGGAAGACAGTGGCCTTAGTTGGAGGGAGTGGCTCAGGAAAATCAACTGTGGTATCACTTTTGCAGAGATTTTATGACCCAATTGGGGGAGAGATACGTGTTGATGGGGTAGCTATTCAAAGGTTGCAACTCAAATGGCTGAGGTCTCAGATGGGTTTGGTTAGCCAAGAACCTGCACTGTTTGCAACCAGCATTAAGGAGAACATACTATTTGGAAAAGAGGATGCTACAGAGGAAGAGGTTGTGGAAGCTGCCAAAGCTTCCAATGCTCATAATTTCATTTCACAGTTACCACAAGGATATGATACTCAGGTAGGGGAGAGAGGAGTTCAAATGTCAGGGGGACAAAAACAAAGGATTGCTATTGCAAGAGCAATAATAAAAAAACCAAGAATTCTTCTACTAGATGAAGCAACAAGTGCACTAGATTCTGAATCAGAACGAGTTGTTCAAGAAGCTTTAGACAAAGCAGCAGTGGGACGCACCACTATCATCATTGCTCACAGATTATCCACCATAAGAAACGCAGATGTCATAGCTGTCGTTCAGAGTGGGAAGATCATGGAAATGGGGTCACACCACCAACTCATCCAAAACGACAATGGACTTTACACCTCACTAGTTCATCTCCAACAAACAGATAAAACAAACAATGAACAAGACGACACTAACGTTTTCTCTCATCCTAATTCATCAATAACATCAAACCGGGACATTATTCAAAACACAAGTAGTCGTAGACTTTCCCTCTTGAGTCGTTCTAGCTCTGCAAACTCTGTTGCTCGTGCTTCATTTGGTGCTGCTGCTGGTGGTGATGATGTTGTTGAAGAGGTTGTATCAGAAGATATGAAGCTACCTATTCCCTCGTTTCGAAGGTTGTTAGCATTGAACATCCCTGAGTGGAAGCAAGCATGTTTAGGATGTTTGAATGCGGTTTTGTTTGGTGCTGTTCAGCCTGTGTATGCATTTGCAATGGGGTCAGTGATATCTGTTTATTTTCTCACAGATCATGATGAGATCAAGAAGAAGACAATGATTTACTCGCTTAGTTTTTTGGGGTTGGCTATTTTCTCGTTTGTTGTTAATATCCTTCAGCATTATAGTTTTGCTTACATGGGTGAGCACTTGACCAAAAGGATCAGAGAGAGAATGCTTTCCAAGATACTCACTTTTGAAGTTGGGTGGTTCGATCAGGACCAAAATTCCAGTGGTGCTGTTTGCTCTAGGCTTGCCAAAGAAGCCAATGTGGTAAGGTCTTTAGTGGGGGACAGAATGGCTCTAGTGGTACAAACTATATCAGCTGTGGTAATAGCCTTCACTATGGGCCTAGTCATTGCATGGAGGCTTGCCCTTGTTATGATAGCCGTGCAACCCGTTATCATAGCATGCTTTTACACAAGACGTGTCCTTCTTAAGAGCATGTCAAGTAAGGCCATGAAGGCCCAAGACGAAAGCAGCAAGATAGCTGCTGAAGCTGTTTCCAACCTTAGAACCATCACTGCCTTTTCTTCCCAAGACAGGATCCTCAAAATACTAGAAAAAGCCCAAGAAGGCCCAAGACGTGAAAGCATTAGACAATCATGGTTTGCTGGAATTGGGCTTGCGTGTTCACAAAGTCTCACATTTTGCACCTGGGCTTTAGATTTTTGGTATGGTGGTAAGCTTGTGTTTCATGGGTACATCAAAGCCAAAGCACTATTTGAGACTTTCATGATCTTGGTGAGCACGGGTAGGGTCATTGCAGATGCTGGTAGCATGACCAATGACCTTTCTAAAGGATCAGATGCTGTGGGCTCAGTTTTTGCAATTCTAGATAGGTACACAAAAATTGAGCCTCATGATATAGATGGGTACAAGCCTGAAAAGTTAACAGGCAAGATAGAACTCCATGATGTTCATTTTGCATACCCTGCTAGGCCCAATGTAATGATCTTCCAAGGCTTCTCAATCAAAATTGATGCAGGCAAATCAACTGCATTGGTGGGACAAAGTGGTTCTGGCAAATCAACAATCATAGGCTTAATAGAGAGGTTCTATGACCCACTTAAAGGGAAAGTGACCATAGATGGTAGAGACATAAAATCATATCACCTTAGGACACTGAGGGAGCACATTGCACTTGTGAGCCAAGAGCCAACACTGTTTGGTGGGACCATAAGGGAGAACATTGCATATGGAGCATCTAATAAGGTTGATGAAACTGAGATCATAGAGGCAGCAAGGGCAGCAAATGCTCATGATTTCATTGCTAGCTTAAAGGAAGGTTATGACACATTGTGTGGGGATAGAGGAGTGCAAATTTCTGGGGGTCAGAAGCAAAGGATTGCAATAGCTAGAGCCATATTGAAGAATCCAGAGGTGTTGTTGCTGGATGAAGCAACAAGTGCCCTTGATAGCCAGTCAGAGAAATTGGTGCAAGATGCTCTTGAAAGGGTTATGGTAGGAAGGACTAGTGTTGTGGTGGCTCACAGGTTGAGCACCATACAAAACTGTGATCTCATTACTGTGTTAGATAAGGGAAGGGTGGTGGAGAAAGGGACCCACTCTTCTTTGTTGGCTAAGGGACCTAGTGGAGCTTATTACTCTTTGGTAAGTCTGCAAAGAAGACCAACCATCACTAGTGCTGACTCTGCACATGAAATCAGCTAA 3819 0.4247 MDGDHNTVSMVSKKKKNNNNGSMRSIFMHADGLDWFFMVLGVIGAIGDGIGTPLVLYVTSHIMNNLGTFSSNGGNTFIHDINKNALTLVYMACGSFVACFLEGYCWTRTGERQATRMRARYLKAVLRQEVAYFDLHVTSTSEVIISVSSDSLVIQDVLSEKVPNFLMNASMFVGSYIVAFALLWRFAIVGFPFVVLLVIPGLIYGRTLMGLARKISKEYNQAGTIAEQAISSIRTVYSFVGESKTIVAFSDALEGSVKLGLKQGLAKGLAIGSNGVVFAIWSFMSYYGSKLVMYHGAKGGTVFAVGASIALGGLALGAGLSNVKYFSEASTAGERIMEVIKRVPKIDSENMAGEILENVSGEVEFYNVEFVYPSRPDSIILKDFCLKVPAGKTVALVGGSGSGKSTVVSLLQRFYDPIGGEIRVDGVAIQRLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDATEEEVVEAAKASNAHNFISQLPQGYDTQVGERGVQMSGGQKQRIAIARAIIKKPRILLLDEATSALDSESERVVQEALDKAAVGRTTIIIAHRLSTIRNADVIAVVQSGKIMEMGSHHQLIQNDNGLYTSLVHLQQTDKTNNEQDDTNVFSHPNSSITSNRDIIQNTSSRRLSLLSRSSSANSVARASFGAAAGGDDVVEEVVSEDMKLPIPSFRRLLALNIPEWKQACLGCLNAVLFGAVQPVYAFAMGSVISVYFLTDHDEIKKKTMIYSLSFLGLAIFSFVVNILQHYSFAYMGEHLTKRIRERMLSKILTFEVGWFDQDQNSSGAVCSRLAKEANVVRSLVGDRMALVVQTISAVVIAFTMGLVIAWRLALVMIAVQPVIIACFYTRRVLLKSMSSKAMKAQDESSKIAAEAVSNLRTITAFSSQDRILKILEKAQEGPRRESIRQSWFAGIGLACSQSLTFCTWALDFWYGGKLVFHGYIKAKALFETFMILVSTGRVIADAGSMTNDLSKGSDAVGSVFAILDRYTKIEPHDIDGYKPEKLTGKIELHDVHFAYPARPNVMIFQGFSIKIDAGKSTALVGQSGSGKSTIIGLIERFYDPLKGKVTIDGRDIKSYHLRTLREHIALVSQEPTLFGGTIRENIAYGASNKVDETEIIEAARAANAHDFIASLKEGYDTLCGDRGVQISGGQKQRIAIARAILKNPEVLLLDEATSALDSQSEKLVQDALERVMVGRTSVVVAHRLSTIQNCDLITVLDKGRVVEKGTHSSLLAKGPSGAYYSLVSLQRRPTITSADSAHEIS 1272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2559g00018 1272 PANTHER ABC TRANSPORTER B FAMILY 9 707 IPR039421 -
Gabi2559g00018 1272 Pfam ABC transporter transmembrane region 696 964 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi2559g00018 1272 Pfam ABC transporter transmembrane region 39 305 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi2559g00018 1272 FunFam ABC transporter B family member 1 25 362 - -
Gabi2559g00018 1272 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1017 1254 IPR003439 GO:0005524
Gabi2559g00018 1272 CDD ABC_MTABC3_MDL1_MDL2 1017 1257 - -
Gabi2559g00018 1272 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 363 599 IPR003439 GO:0005524
Gabi2559g00018 1272 ProSitePatterns ABC transporters family signature. 502 516 IPR017871 GO:0005524|GO:0016887
Gabi2559g00018 1272 CDD ABC_6TM_Pgp_ABCB1_D1_like 38 336 - -
Gabi2559g00018 1272 Gene3D ABC transporter type 1, transmembrane domain 86 991 IPR036640 GO:0005524|GO:0016020
Gabi2559g00018 1272 Gene3D - 361 614 IPR027417 -
Gabi2559g00018 1272 Gene3D - 1007 1264 IPR027417 -
Gabi2559g00018 1272 SUPERFAMILY ABC transporter transmembrane region 29 344 IPR036640 GO:0005524|GO:0016020
Gabi2559g00018 1272 SUPERFAMILY ABC transporter transmembrane region 678 1001 IPR036640 GO:0005524|GO:0016020
Gabi2559g00018 1272 CDD ABC_6TM_Pgp_ABCB1_D2_like 684 1000 - -
Gabi2559g00018 1272 FunFam ABC transporter B family member 4 353 610 - -
Gabi2559g00018 1272 Pfam ABC transporter 1036 1185 IPR003439 GO:0005524
Gabi2559g00018 1272 FunFam Putative ABC transporter B family member 8 660 1005 - -
Gabi2559g00018 1272 CDD ABC_MTABC3_MDL1_MDL2 363 601 - -
Gabi2559g00018 1272 SMART AAA_5 390 576 IPR003593 GO:0016887
Gabi2559g00018 1272 SMART AAA_5 1044 1237 IPR003593 GO:0016887
Gabi2559g00018 1272 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1009 1257 IPR027417 -
Gabi2559g00018 1272 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 701 982 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi2559g00018 1272 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 356 601 IPR027417 -
Gabi2559g00018 1272 Pfam ABC transporter 381 530 IPR003439 GO:0005524
Gabi2559g00018 1272 FunFam ABC transporter B family member 4 1007 1263 - -
Gabi2559g00018 1272 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 39 328 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi2559g00018 1272 ProSitePatterns ABC transporters family signature. 1157 1171 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2559g00018 Gabi-Chr2559 286069 293130 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2559g00018 696 1272 Calmodulin-binding Proteins AT2G36910 37.414 2.66e-116 392