Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2559g00017 ATGAAGAGAGTAAGGGATGACATTTATGCTGGTTCTGGCTCTCAATTCAAACGCCCCTTTAGTTCCTCACGTGGTGATTCCTATGGCCAAACCCAAGTCCCTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGGAGGAGGAGGAGGAGGAGGTAGTGTTGGTGGGGGAGCAACTACTTCCCAGAAACTGACTACCAATGATGCCTTATCCTATTTGAAGGAAGTGAAAGACATGTTTCAGGACAAAAGAGAAAAATATGACATGTTCCTTGAGGTCATGAAAGATTTCAAGGCTCAAAGGACTGACACGGCTGGTGTCATAGCAAGGGTGAAGGAGCTATTCAAAGGGCACAACAATTTGATTTTTGGATTTAACACTTTCCTGCCAAAGGGATATGAGATAACCCTTGACGAGGATGAGGCTCCTCCAAAGAAAACTGTTGAATTTGAAGAAGCTATTAGTTTTGTGAACAAGATAAAGAAACGATTCCAAAGTGATGAGCATGTTTACAAATCGTTCTTGGACATTTTGAATATGTACCGCAAAGAGCATAAGGACATCGGTGAAGTTTATAGTGAGGTTGCTACCCTGTTTAAGGATCATCGAGATTTGCTTGAGGAGTTCACTAGATTCTTACCAGATACTTCCGCAGCACCTTCTACACAGCATGCTCCATATGCTCGAAATTCATTGCAGCGCTTTAGTGAGCGGAGTTCTATGGCACCCATGATGCGGCAAATGCAAGTAGACAAGACACAACGATATCGACGAGAGAGGCTTCCTTCTCATGACCGTGAGCGTGATCTGAGTGTTGAACACCCTGAGCTGGATGATGACAAAACAATGATGAACATGCACAAGGAGCAGAGGAAACGTGAGAGTAAGGATAGGAGGATTCGTGATCAGGATGAGAGAGAACCTGATCTTGATAACAGCAGGGATTTGAACTTGCAGCGCTTTCCTGAGAAAAAGAAATCTGTCAAGAAGGCTGAAGGTTTTGGGTTGGCTTCAGACTTTTCTTCTAATGAAGACAAGGATACCTTAAAGAACATGTATAGTCAAGCATTCAGTTTCTGTGAGAAAGTTAAGGAGAAGTTGAACAGTGCTGATGACTACCAAGCTTTCTTGAAGTGCCTTCATATTTTCAGCAGTGGAATAATAAAAAGGAATGATTTGCAAAATTTGGTAACCGATTTACTTGGAAAGCATCCTGATCTTATGGAGGAATTCAATGATTTCCTGGAGCGTTGTGAAAATATTGATGGGTTCCTTGCTGGTGTCATGAGTAAAAAGTCACTGTCTACTGATGGTCATTTATCAAGATCATCAAAGTTGGAGGACAAAGACAAAGAGCAGAAGCGTGAGATGGATGGAGCTAAAGAGAAGGAAAGATACAGGGAGAAGTACATGGGAAAATCCATTCAAGAACTTGACCTTAGTGACTGTAAACGTTGCACTCCCAGCTACCGGCTTCTACCTGCAGATTATCCAATTCCTACAGCTAGTCAGAGATCTGAGCTTGGTGCTCAAGTATTGAATGATCACTGGGTATCTGTGACTTCAGGAAGTGAGGATTACTCTTTCAAACATATGCGCAGGAATCAATACGAAGAGAGCTTGTTCAGATGTGAAGATGACAGATTTGAGCTGGACATGTTATTAGAGTCTGTGAGTTCTGCAGCTAAACGTGTAGAGGAATTATATAATAACATGAATGAAAATAAGATCAATATGGAGACTCTGAACCGTATTGAAGATTACTTTACTGTTCTAAATTTAAGGTGCATTGAACGTCTATATGGTGACCATGGTCTTGACGTTATAGACATATTGCGTAAAAACCCAACTCATGCGCTCCCTGTAATATTGACTCGACTGAAGCAGAAACAGGAGGAGTGGAGTCGGTGTCGTTCAGATTTCAATAAAGTTTGGGCTGAAATTTATTCTAAAAATCACTACAAATCACTTGATCATCGTAGCTTCTATTTCAAGCAACAAGATTCCAAGAACGTGGGCGCAAAATCTTTTGTGGCTGAGATTAAAGAAATTAAAGAGAAGCAGCAGAAAGAGGATGATATTCTTCAGTCTATTGCAGCTGGAAATAAACAGCCTCTAATTCCACATCTGGATTTTGAATATTCTGATGCTGGTATTCATGATGATCTGTATAAACTAGTTCGGTATTCATGTGAAGAGGTATTCTCAAGTAAAGAGCTATTAAATAAGATTATGAGGCTCTATAGTACCTTCTTGGAGCCTATGCTTGATGTTCCTTCTCATGGAACAGAAAGGGCAGAGGACAGGAAAGCAGGTCATAATGTTCGCAATTTTGTTGCACCAAATATAGTGGGTGATGGAAGCACTAATGGAGACTCTATTCCAATAAATTCAAGGTTACCAAAATCTGATAAGAATGAGGCTGATGGTAGAGTAACTGAGGTAAAGAATGTTCACCGGACTAGTGTAGCAGCCAGTGATAAAGAAAATGGACCTGTTGGTGGTGAGCTTGTTAGTAGAGATGATCCGTTAATGGAAAAAGCGCAGAAAAATGTAGAATTCAGTGATAAAGCCTCGGGGTTTAGTAAACCATTTGCCTCTGATGAGCAAGGAGCTAAAAACAGTGCACCAACTGCAATTAGAGGAGAAAACAGCATAAGCAGAACCAACCTAGATTCAACTCCAGGCTGTGTCCTTACTCCATCACGACCTAATGATGCTGATGATTCTGTGGCCAAGTCTCAGAGTGTTAATGTACCATTGGTGGAGGGATGTGACATTGCAGCTCCAGTACCAGTGGCCAATGGGGTGCTAATTGAGAGCAGTAATGTTAAAAGCCATGAAGAATCTGCTGGGCCTTGCAAAATTGAAAAGGAAGAGGGTGAATTATCACCAAATGGTGATTCTGAGGAGGATAACTTTGTTGCTTATGCAGATTCAAATGGGCAGTCAATGCCTAAGTCAAAGCACAATATGGAAAGAAGGAAATATCAGTCTAGAAATGGAGAGGACGAGTGCTGTCCAGAGGCTGGAGGTGATAATGATGCAGATGCTGATGATGAGGACAGTGAAAATGTTTCTGAAGGTGGTGAAGATGTCTCAGGCAGTGAGTCTGCTGGTGATGAATGCTTTCGGGATGATCACGAGGAGGAAGAAGATATAGAACACGATGATGTTGATGGTAAGGCTGAGAGTGAAGGTGAAGCTGAGGGGATGTGTGATGCACAAGCTGGCGGAGATGGCTCATCATTACCGTTGTCAGAAAAGTTCCTTTCGTCTGTGAAACCTCTCACAAAGCATGTCTCAGCAGTTTCATTTGTTGAAGAAATGAAGGATTCAAGGGTGTTTTACGGAAATGATGATTTCTATGTACTTTTTAGGCTTCATCAAATTCTTTATGAAAGGATCTTATCAGCAAAAACAAATTCAATGAGTGCAGAAATGAAATGGAAAGCAAAAGATACTAGTTCCCCAGATCCTTATTCAAGATTTATGAATGCGTTGTACAACTTGCTTGACGGATCTGCCGAGAATGCAAAGTTTGAAGATGAATGCCGAGCTATTATTGGGAATCAGTCATATGTGTTATTCACATTGGACAAGTTAATATATAAATTGGTCAGACAGCTTCAAACTGTTGCAACCGATGAGTTAGACAATAAACTACTCCAATTATATGAGTATGAAAAGTCTCGGAAACCTGGGAAATTAATTGATTCAGTATATCATGCAAATGCACATGTCATCCTTCATGAGGAGAATATATACCGTTTGCAATGTTCCTCTACCCCCACTCGTCTATCCATCCAGCTCATGGACAACATGAATGAAAAGCCTGAGTTGTTTGCGGTTTCTATTGATCCGAATTTTTCTTTTTATCTGCACAATGAGTTTCTGTCTGTCATTCCTGGCAAAAAAGAACCCCATGGCATTATAATGCAAAGAAACAAACGCAAATATGGAGACGTAGATGAGCTTTCTGCAATATGCTCTGCCATGGAAGGTGTTAAAGTGATTAATGGATTGGAATGTAAGATAGCTTGCAACTCATCCAAGATTTCCTATGTTCTTGACACACAAGATTTTTTCTTCCGTCCTAGGAAGAAAAGACGAACATCATCAGGGACCACATCCTCACAGCATCGAAGGGATAGAGAGGAAAGATTCCGCAGAATGTTGGCATGCTCCTAA 4197 0.4127 MKRVRDDIYAGSGSQFKRPFSSSRGDSYGQTQVPGGGGGGGGGGGGGGGGGGGGSVGGGATTSQKLTTNDALSYLKEVKDMFQDKREKYDMFLEVMKDFKAQRTDTAGVIARVKELFKGHNNLIFGFNTFLPKGYEITLDEDEAPPKKTVEFEEAISFVNKIKKRFQSDEHVYKSFLDILNMYRKEHKDIGEVYSEVATLFKDHRDLLEEFTRFLPDTSAAPSTQHAPYARNSLQRFSERSSMAPMMRQMQVDKTQRYRRERLPSHDRERDLSVEHPELDDDKTMMNMHKEQRKRESKDRRIRDQDEREPDLDNSRDLNLQRFPEKKKSVKKAEGFGLASDFSSNEDKDTLKNMYSQAFSFCEKVKEKLNSADDYQAFLKCLHIFSSGIIKRNDLQNLVTDLLGKHPDLMEEFNDFLERCENIDGFLAGVMSKKSLSTDGHLSRSSKLEDKDKEQKREMDGAKEKERYREKYMGKSIQELDLSDCKRCTPSYRLLPADYPIPTASQRSELGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVSSAAKRVEELYNNMNENKINMETLNRIEDYFTVLNLRCIERLYGDHGLDVIDILRKNPTHALPVILTRLKQKQEEWSRCRSDFNKVWAEIYSKNHYKSLDHRSFYFKQQDSKNVGAKSFVAEIKEIKEKQQKEDDILQSIAAGNKQPLIPHLDFEYSDAGIHDDLYKLVRYSCEEVFSSKELLNKIMRLYSTFLEPMLDVPSHGTERAEDRKAGHNVRNFVAPNIVGDGSTNGDSIPINSRLPKSDKNEADGRVTEVKNVHRTSVAASDKENGPVGGELVSRDDPLMEKAQKNVEFSDKASGFSKPFASDEQGAKNSAPTAIRGENSISRTNLDSTPGCVLTPSRPNDADDSVAKSQSVNVPLVEGCDIAAPVPVANGVLIESSNVKSHEESAGPCKIEKEEGELSPNGDSEEDNFVAYADSNGQSMPKSKHNMERRKYQSRNGEDECCPEAGGDNDADADDEDSENVSEGGEDVSGSESAGDECFRDDHEEEEDIEHDDVDGKAESEGEAEGMCDAQAGGDGSSLPLSEKFLSSVKPLTKHVSAVSFVEEMKDSRVFYGNDDFYVLFRLHQILYERILSAKTNSMSAEMKWKAKDTSSPDPYSRFMNALYNLLDGSAENAKFEDECRAIIGNQSYVLFTLDKLIYKLVRQLQTVATDELDNKLLQLYEYEKSRKPGKLIDSVYHANAHVILHEENIYRLQCSSTPTRLSIQLMDNMNEKPELFAVSIDPNFSFYLHNEFLSVIPGKKEPHGIIMQRNKRKYGDVDELSAICSAMEGVKVINGLECKIACNSSKISYVLDTQDFFFRPRKKRRTSSGTTSSQHRRDREERFRRMLACS 1398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2559g00017 1398 ProSiteProfiles PAH domain profile. 351 420 IPR003822 GO:0006355
Gabi2559g00017 1398 Gene3D Paired amphipathic helix 349 422 IPR036600 GO:0006355
Gabi2559g00017 1398 FunFam Paired amphipathic helix protein SIN3 349 422 - -
Gabi2559g00017 1398 SUPERFAMILY PAH2 domain 354 420 IPR036600 GO:0006355
Gabi2559g00017 1398 ProSiteProfiles PAH domain profile. 148 218 IPR003822 GO:0006355
Gabi2559g00017 1398 Pfam Paired amphipathic helix repeat 373 417 IPR003822 GO:0006355
Gabi2559g00017 1398 Pfam Paired amphipathic helix repeat 87 131 IPR003822 GO:0006355
Gabi2559g00017 1398 Pfam Paired amphipathic helix repeat 171 215 IPR003822 GO:0006355
Gabi2559g00017 1398 MobiDBLite consensus disorder prediction 1046 1061 - -
Gabi2559g00017 1398 SMART hdac_interact2seq4b 484 584 IPR013194 -
Gabi2559g00017 1398 Coils Coil 445 465 - -
Gabi2559g00017 1398 MobiDBLite consensus disorder prediction 236 326 - -
Gabi2559g00017 1398 Pfam Sin3 family co-repressor 486 578 IPR013194 -
Gabi2559g00017 1398 SUPERFAMILY PAH2 domain 145 217 IPR036600 GO:0006355
Gabi2559g00017 1398 Gene3D Paired amphipathic helix 70 132 IPR036600 GO:0006355
Gabi2559g00017 1398 MobiDBLite consensus disorder prediction 860 913 - -
Gabi2559g00017 1398 MobiDBLite consensus disorder prediction 1370 1389 - -
Gabi2559g00017 1398 FunFam Paired amphipathic helix SIN3-like protein 147 218 - -
Gabi2559g00017 1398 MobiDBLite consensus disorder prediction 945 1083 - -
Gabi2559g00017 1398 PANTHER SIN3B-RELATED 64 1259 IPR039774 GO:0003714
Gabi2559g00017 1398 MobiDBLite consensus disorder prediction 1 62 - -
Gabi2559g00017 1398 MobiDBLite consensus disorder prediction 990 1009 - -
Gabi2559g00017 1398 MobiDBLite consensus disorder prediction 15 30 - -
Gabi2559g00017 1398 Coils Coil 557 587 - -
Gabi2559g00017 1398 MobiDBLite consensus disorder prediction 253 326 - -
Gabi2559g00017 1398 MobiDBLite consensus disorder prediction 783 814 - -
Gabi2559g00017 1398 MobiDBLite consensus disorder prediction 1010 1030 - -
Gabi2559g00017 1398 Gene3D Paired amphipathic helix 147 219 IPR036600 GO:0006355
Gabi2559g00017 1398 MobiDBLite consensus disorder prediction 870 902 - -
Gabi2559g00017 1398 Pfam C-terminal domain of Sin3a protein 1118 1365 IPR031693 -
Gabi2559g00017 1398 SUPERFAMILY PAH2 domain 62 133 IPR036600 GO:0006355
Gabi2559g00017 1398 FunFam Paired amphipathic helix protein Sin3 70 132 - -
Gabi2559g00017 1398 MobiDBLite consensus disorder prediction 437 465 - -
Gabi2559g00017 1398 ProSiteProfiles PAH domain profile. 64 134 IPR003822 GO:0006355
Gabi2559g00017 1398 MobiDBLite consensus disorder prediction 785 802 - -
Gabi2559g00017 1398 MobiDBLite consensus disorder prediction 443 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2559g00017 Gabi-Chr2559 260211 273258 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2559g00017 52 167 WRKY Transcription Factor Family AT4G12020 50.427 2.03e-23 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gabi2559g00017 Sin3a_C 4.7e-54 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2559g00017 K11644 - gmx:100807181 2379.36