Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2558g00008 ATGGTTGGATTGGAACTCATACCCATTGGTACAATTTTGGCTGTTCTAACCAGCCAGGTCTTGAAAACAGCTAATGCAGCAATGGATGTTGTTATTGATAAAGAAAGTTTCAAGGTCCTTTCAAAACACCTGCTTGATATTGCGCCAGTCCTAAAGGAATTACAGCTTCAGGAACTGAATGAGTCTCAAGCTGCAAGGGTTGCTCTGGAGTCTCTTGAATCAGATGTCAAAAAGGCGAACAATTTGGTTGAGAAGTACAGGAACCGTGGCCGTTTTTACTTACTGGTGAAGTGCCGATACATAGTTACGGAGGTTGAACAAGTCACAAGGGATATTGGAAGGTCTCTGGCTGCACTATCTATTGCAAATACTGAAGTCTTGTCAAGAATATCTGATCAGGTCAACAAACTACAAAGTGAGATGCAAAGGGTGGAGTTTGGGGCTTCACAATCTCAGCTTCAAATTGTTGAGAAGTTGAACCATGGGATTAGGGAGCAGAAACTAGATCAAGCTTTTGCAAATGACATGCTTGAGGAAATAGCAAGGGCAGTTGGGATTCCAGTGGAGCCTTCAGAGATAAGCAAAGAGATTTCCAGCATTAGGTGGGAAAAAGAAGAAGCTGCCAACAGAAAAGAAAGAGCTGAAGTTGTCTTTTTAGAGCAGATCATTGAGCTACTTTCACGAGCCGATGCTGCGAGGGATTATGAAGAAGTTAAGAAGCAATACTTTGAAAGGGTTCAGGTAATAGAGCGATATGATTCAAGGGAAAAGTATATCCTACCACTTAATTCTTTCCTTTGTTGCATAACTGGAGCTGTTATGGTAGATCCTGTCAGCCTTTGCACTGGTACTACATGTGAGAGATCCGCAATTGAAGCTTGGTTTGATGATGGCAACAGGACTGACCCAGATACAAAAGAGGTTCTTGAAGATACTAGCTTGAGGTCAAACATTCCATTAAGACAATCCATTGAAGAGTGGAGAGAACTTAATTACTGCTGTAGTATAAGGTCTATCAGGGAAAATCTCTTGTCCAATTCTGACTTGTTTTTGCAAGAATCCCTGAGCCAAATGCAGGCTCTCATAAGAGAGAATTCTATTAACAAGGATTGGATTTCTATAGGAGAGCTTACTGATATTATTATCTCCATCCTTGGGAAATCTGTTTCCGGAGATGTGAAGACAAAGATCTTGATTGCTTTGAAAGATGCGGTAGAGGGGCATGCGAGAAACAAGGAAAAAGTGGTTGAATCTCAAGGGTGGGATCACATCATTTCCTGCTTAGGGAGTGACTATAAAATTTCAAAGGAAGCAATTTATTTGCTATATGAATTGCTTCAAGACCGATCTGGTTGGAATAAACGTTTCTGCAAAAAACTCTCTGAGCATCCTAGGGCTATTCTTTACCTTGTTACCCTTCGAAAGGGTCCTGCCAACGATTCAGCTGGGGTTGCAGAAAAGATTTTGATGGAGCTTTTTGAAATAGAAGAGGAAAACATTTCTGGTGCAGCTAAGTTTGGCTGGTACAAACCGCTTGTTGATCGCATGATTCAAGGATCGGAGTCTTCAAGAATGTCAATGGCAAAAGTCATAGTTAATTTGGAGTTGAAAGATTTAAACTTGAAAGTCCTTGGCGAGCAAGGAGTTATACCAGTTTTGCTAGAAATGCTATCTGGTAGCATTGAATCAAAAGAATTGTCGTTATCAGCCCTGGTTAAACTAGCAGGATTTCATGCCAATAAGGGGATTATTGCTGCATCTGGGGGTGTGCCTCTTGTTCTAGATTTAATGTTCTCTCGTAGGATGTGGACATTCATTACCATTAAATGCTGTGAAATCCTTGAGAAGCTTTCTTCGGATGACGATGGAATTGATTTCTTTGTTGATGGAGAAGGGAAACAACTCGAGTTAGATAACATAATCACCAATTTGCTAGCTCTTCAGCAGAGTCCTAACTCAGCTCACAACTTCCGTAAGCCTGCATTACGCGCTCTTCTTGGCATTTGCAAGTTTGAGACAGATTTAGTTAAGAAAGCAGTTCTAGCAGCCAATGGTGTATCTCTAATCCTTCCCCTTCTTGATGATTCTGACTCAGAAATCAGGGAGACTGCCATAAATCTTCTCTTTCTTTTCTCTCAACATGAACCAGAAGGAGTAGTTGAATACCTCTTCAGGCCCAGAAGACTGGAAGCTTTAGTTGGTTTTCTTGAGAATGATGACAATAATGATGTACAAATGGCTGCTGCTGGTTTACTTGCTAACCTTCCAAAATCAGAACGAGAACTCACTATGAAATTGATTGACTTGGGTGGCCTTGATGCAATCATAAGCATTTTGAAAAATGGTACAATGGAAGCAAAAGAAAATGCTCTAAGTGCACTCTTCAGGTTTACAGATCCTACAAATATCGAGTCACAGCGCGATTTGGTTAAACGAGGAATATATCCTTTGCTTGTGAATTTTCTCAATACTGGTTCAGTAACAGCAAAGGCAAGAGCAGCAGCATTCATTGGTGATCTTTCTATGAGCACTCCAAAGCTCACAGTTGTTTCCAAATCAAATGGTTGCTGGTGTTTTATATCATCAAGGGTCCCTTTATGTTCAGCACATGGGAGTGTATGCAGTGTGACTTCCACATTTTGTCTATTGGAAGCAAATGCTTTGCCTGGCTTGATAAAGCTGTTACATGGAGAGGTTCATGCAACTGCTTATGAAGCTATTCAAACACTTTCCACATTGGTTTTGGAAGACTTTCCTCACAGGGGAGCTCGTGTCTTGCATGAGTCAAATGCAATGAGACCCTTATTGGAAGTTTTGAATTGGGGAACTGATTCTCTCAAGGCTGAAGCACTAGGACTATTGGAGAAGGTGTTTGTCTCAAAGGAAATGGTTGAATACTATGGAACAACTGCTAGATTACGTCTAGTTAGTCTCACTGGCATGAATATATATGGAGATGGCCATCTAAGGAGAAAGGCTGCCAGGGTACTATCATTGCTTGAACGCTATTCAAAGTCATCATCATCTGCAATCTCTGGAGTTCTAGAGTGA 3051 0.41 MVGLELIPIGTILAVLTSQVLKTANAAMDVVIDKESFKVLSKHLLDIAPVLKELQLQELNESQAARVALESLESDVKKANNLVEKYRNRGRFYLLVKCRYIVTEVEQVTRDIGRSLAALSIANTEVLSRISDQVNKLQSEMQRVEFGASQSQLQIVEKLNHGIREQKLDQAFANDMLEEIARAVGIPVEPSEISKEISSIRWEKEEAANRKERAEVVFLEQIIELLSRADAARDYEEVKKQYFERVQVIERYDSREKYILPLNSFLCCITGAVMVDPVSLCTGTTCERSAIEAWFDDGNRTDPDTKEVLEDTSLRSNIPLRQSIEEWRELNYCCSIRSIRENLLSNSDLFLQESLSQMQALIRENSINKDWISIGELTDIIISILGKSVSGDVKTKILIALKDAVEGHARNKEKVVESQGWDHIISCLGSDYKISKEAIYLLYELLQDRSGWNKRFCKKLSEHPRAILYLVTLRKGPANDSAGVAEKILMELFEIEEENISGAAKFGWYKPLVDRMIQGSESSRMSMAKVIVNLELKDLNLKVLGEQGVIPVLLEMLSGSIESKELSLSALVKLAGFHANKGIIAASGGVPLVLDLMFSRRMWTFITIKCCEILEKLSSDDDGIDFFVDGEGKQLELDNIITNLLALQQSPNSAHNFRKPALRALLGICKFETDLVKKAVLAANGVSLILPLLDDSDSEIRETAINLLFLFSQHEPEGVVEYLFRPRRLEALVGFLENDDNNDVQMAAAGLLANLPKSERELTMKLIDLGGLDAIISILKNGTMEAKENALSALFRFTDPTNIESQRDLVKRGIYPLLVNFLNTGSVTAKARAAAFIGDLSMSTPKLTVVSKSNGCWCFISSRVPLCSAHGSVCSVTSTFCLLEANALPGLIKLLHGEVHATAYEAIQTLSTLVLEDFPHRGARVLHESNAMRPLLEVLNWGTDSLKAEALGLLEKVFVSKEMVEYYGTTARLRLVSLTGMNIYGDGHLRRKAARVLSLLERYSKSSSSAISGVLE 1016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2558g00008 1016 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 243 335 IPR013083 -
Gabi2558g00008 1016 SMART arm_5 408 447 IPR000225 GO:0005515
Gabi2558g00008 1016 SMART arm_5 759 799 IPR000225 GO:0005515
Gabi2558g00008 1016 SMART arm_5 919 959 IPR000225 GO:0005515
Gabi2558g00008 1016 SMART arm_5 802 842 IPR000225 GO:0005515
Gabi2558g00008 1016 SMART arm_5 673 713 IPR000225 GO:0005515
Gabi2558g00008 1016 SMART arm_5 715 757 IPR000225 GO:0005515
Gabi2558g00008 1016 SMART arm_5 875 915 IPR000225 GO:0005515
Gabi2558g00008 1016 SMART arm_5 537 576 IPR000225 GO:0005515
Gabi2558g00008 1016 CDD MLKL_NTD 20 145 - -
Gabi2558g00008 1016 SUPERFAMILY ARM repeat 637 1003 IPR016024 -
Gabi2558g00008 1016 Pfam U-box domain 264 329 IPR003613 GO:0004842|GO:0016567
Gabi2558g00008 1016 Gene3D - 9 123 IPR036537 GO:0007166
Gabi2558g00008 1016 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Gabi2558g00008 1016 SUPERFAMILY RING/U-box 249 329 - -
Gabi2558g00008 1016 Gene3D - 338 491 IPR011989 -
Gabi2558g00008 1016 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 11 1008 - -
Gabi2558g00008 1016 Gene3D - 492 632 IPR011989 -
Gabi2558g00008 1016 Coils Coil 62 89 - -
Gabi2558g00008 1016 CDD RING-Ubox_PUB 265 314 IPR045210 -
Gabi2558g00008 1016 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 727 755 IPR000225 GO:0005515
Gabi2558g00008 1016 Gene3D - 633 857 IPR011989 -
Gabi2558g00008 1016 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Gabi2558g00008 1016 SUPERFAMILY ARM repeat 345 716 IPR016024 -
Gabi2558g00008 1016 Gene3D - 860 1014 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2558g00008 Gabi-Chr2558 126387 131947 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2558g00008 264 973 U-box Gene Family AT1G20780 27.910 3.47e-42 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2558g00008 - - gsj:114377374 1686.77