Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2558g00004 ATGGAACCACGGCAGCCGCCAGCACCGCCACCATCGCAGCCGTCTCGTACCATCCTCGGAAAGTACCAACTGACGCGGTTCCTCGGCCGCGGAAATTTCGCAAAGGTGTACCAAGCGCGCTCACTGATCGACGGCTCTACGGTTGCCGTGAAGATCATCGACAAATCCAAAACGGTGGACGCCGCCATGGAACCGAGAATCGTGAGAGAAATCGACGCCATGCGCCGCCTCCACCACCACCCTAACATCCTCAAAATCCACGAGGTCATGGCCACAAAGACAAAGATCTACCTCATCGTCGACTACGCAGGCGGCGGCGAGCTCTTCGCCAAGATCTCCCGCCGTGGAAAATTGCCGGAGTCCGTCGCACGCCGCTACTTCCAGCAGCTTGTCTCCGCCCTCTGCTTCTGTCACAAAAACGGCGTCGCACACCGCGATCTCAAGCCGCAGAACCTCCTCCTCGACGACGACGGCAACCTCAAGGTCTCCGATTTCGGTCTCTCAGCGTTGCCAGAGCAGTTGAAGAACGGCTTGCTTCACACGGCTTGCGGCACGCCGGCGTACACGGCGCCGGAGATCCTCTGCCGGCTGAGCTACGACGGTTCGAAGGCGGACGCGTGGTCGTGCGGTGTGATCCTTTACGTTTTCCTCGCCGGTCACCTTCCGTTCGATGACATGAACATTCCGGCGATGTGCAAGAGGATCAGCCGGCGCGATTACGAGTTTCCGGCGTCGGTTTCGAAGGCTGCGCGGCACCTCATCTACCAGCTTCTCGACCCGAACCCGAAGACCCGAATGAGGTTGGAGTCTGTATTTGAGAACTCGTGGTTTAAGAAATCGCTGAGAGGGAAACCACAAGAGAGAGAAAGCGTGTTCGAATCTGATTTGTATAACAAATGTTGCGACGGTTACAAATTGGGAATGAACGCGTTTGATATAATATCAATGTCTTCGGGGTTGGATTTGAGGGGGTTGTTCGAAACGATGTCGTTGGATGAGAGGAGGAAGAGAGAGAAGAGGTTCACTTCGAATCAGAAGGTGGAGGTTGTGGAGGAAAAGGTGAAGGAGGTTGGTGGAATTTTGGGGTTTAGGGTTGAAATTGGGAAGAATGGGGCAATTGGTTTGGGTAAGGGAAAGGTGGCTATTGTTGTTGAAGTGTTTGAGATTGTGCCTGAGTTGTTGTTGGTCGCTGTTAAAGTGGTGGATGGTGGTTTAGAGTTTGAGGAGCTTCACTGGGGTGACTGGAAAATTGGTCTTCAAGATGTTGTTCTTTCATGGCATAATGAATCACCACCATGCATGTGA 1305 0.5379 MEPRQPPAPPPSQPSRTILGKYQLTRFLGRGNFAKVYQARSLIDGSTVAVKIIDKSKTVDAAMEPRIVREIDAMRRLHHHPNILKIHEVMATKTKIYLIVDYAGGGELFAKISRRGKLPESVARRYFQQLVSALCFCHKNGVAHRDLKPQNLLLDDDGNLKVSDFGLSALPEQLKNGLLHTACGTPAYTAPEILCRLSYDGSKADAWSCGVILYVFLAGHLPFDDMNIPAMCKRISRRDYEFPASVSKAARHLIYQLLDPNPKTRMRLESVFENSWFKKSLRGKPQERESVFESDLYNKCCDGYKLGMNAFDIISMSSGLDLRGLFETMSLDERRKREKRFTSNQKVEVVEEKVKEVGGILGFRVEIGKNGAIGLGKGKVAIVVEVFEIVPELLLVAVKVVDGGLEFEELHWGDWKIGLQDVVLSWHNESPPCM 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2558g00004 434 ProSiteProfiles Protein kinase domain profile. 22 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2558g00004 434 Gene3D Phosphorylase Kinase; domain 1 11 105 - -
Gabi2558g00004 434 FunFam Non-specific serine/threonine protein kinase 15 107 - -
Gabi2558g00004 434 SUPERFAMILY Protein kinase-like (PK-like) 18 283 IPR011009 -
Gabi2558g00004 434 Gene3D Kinase associated domain 1, KA1 306 424 - -
Gabi2558g00004 434 ProSiteProfiles NAF domain profile. 303 327 IPR018451 GO:0007165
Gabi2558g00004 434 CDD CIPK_C 309 420 - -
Gabi2558g00004 434 SMART serkin_6 22 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2558g00004 434 Gene3D Transferase(Phosphotransferase) domain 1 106 303 - -
Gabi2558g00004 434 ProSitePatterns Protein kinases ATP-binding region signature. 28 51 IPR017441 GO:0005524
Gabi2558g00004 434 ProSitePatterns Serine/Threonine protein kinases active-site signature. 142 154 IPR008271 GO:0004672|GO:0006468
Gabi2558g00004 434 Pfam Protein kinase domain 22 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2558g00004 434 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 13 398 - -
Gabi2558g00004 434 FunFam Non-specific serine/threonine protein kinase 306 424 - -
Gabi2558g00004 434 FunFam Non-specific serine/threonine protein kinase 12 302 - -
Gabi2558g00004 434 Pfam NAF domain 308 366 IPR004041 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2558g00004 Gabi-Chr2558 12177 13686 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2558g00004 5 429 Miscellaneous Gene Families AT3G23000 58.005 3.82e-171 485
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Gabi2558g00004 Pkinase 5.8e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2558g00004 K12761 - gmx:100305372 666.381