Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2556g00031 ATGGCCATAAGGCCCTTTCAATTCAACTTCTCGCGCGATAGATTGGTCTTTCTCTTCCGCATTTCTCAATCTCATTCATTTCCTTCTTCTTTTCCCTCAAAATTCCCCAAAACTTTTTCCCCAAACTTTTTCTTCCGCCACATCGCTGCGTCCGCGCCAGCTCCGCTCGCAAGCCCTCCGCCGCCGCAGTCACACGACTTCCGCCGCCGCGCGCCGCAGATTCCAGCCGACACCATGGCGCAAAAGATTGGAAAATCCACTCGCCGCCCTGGCGCGTCCTCCAAGGCGAGGGTTTATGCCGATGTCAACGTCGTTCGCCCCAAAGAATATTGGGACTACGAGTCCCTCACCGTCCAGTGGGGGGAGCAAGATGATTATGAGGTTGTGAGGAAGGTGGGTAGGGGGAAATATAGTGAGGTGTTTGAAGGTGTTCACTGCACGGATAATGAAAAATGTATCATCAAAATCCTGAAACCCGTGAAGAAGAAAAAGATCAAGAGGGAAATCAAAATACTACAGAATCTTTGTGGAGGGCCCAATATTGTAAAGCTGCTTGACATTGTTAGAGACCAGCAGTCGAAGACCCCAAGTCTTATATTTGAATATGTCAATAACACTGATTTTAAAGTGCTTTACCCTACATTGTCAGACTATGATATACGATATTATATCTATGAACTTTTAAAGGCACTGGATTATTGCCATTCACAAGGAATCATGCATCGGGATGTAAAGCCACATAATGTAATGATTGACCATGAGCAGCGTAAGCTTCGCCTTATAGATTGGGGGCTTGCAGAGTTCTATCATCCTGGGAAAGAATATAATGTTCGTGTTGCTTCAAGATATTTCAAAGGTCCTGAACTTCTTGTTGATCTTCAAGATTACGATTACTCTCTAGATTTATGGAGTCTTGGTTGTATGTTTGCTGGCATGATATTCCGTAAGGAGCCATTCTTTTATGGACATGATAACTACGATCAACTGGTCAAAATTGCTAAGGTACTTGGGACAGATGAGTTAAGTTCATATTTGAATAAGTATCGCATAGAGTTGGATCCGCATCTTGCAGCACTTATTGGAAGGCATAGCCGGAAACCATGGGCAAAGTTCATTAATGTAGAAAATCAACACTTGGCCGTTCCTGAGGCTGTTGACTTTGTTGACAAGTTACTCCGATATGATCACCAAGAACGTCCCACTGCAAAGGAAGCCATGGCCCACCCGTACTTCAATCCAATTAGAAATGCAGAAAGTAGTAGAACTCGAACACATTGA 1278 0.4437 MAIRPFQFNFSRDRLVFLFRISQSHSFPSSFPSKFPKTFSPNFFFRHIAASAPAPLASPPPPQSHDFRRRAPQIPADTMAQKIGKSTRRPGASSKARVYADVNVVRPKEYWDYESLTVQWGEQDDYEVVRKVGRGKYSEVFEGVHCTDNEKCIIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQQSKTPSLIFEYVNNTDFKVLYPTLSDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHEQRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDLWSLGCMFAGMIFRKEPFFYGHDNYDQLVKIAKVLGTDELSSYLNKYRIELDPHLAALIGRHSRKPWAKFINVENQHLAVPEAVDFVDKLLRYDHQERPTAKEAMAHPYFNPIRNAESSRTRTH 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2556g00031 425 SUPERFAMILY Protein kinase-like (PK-like) 97 415 IPR011009 -
Gabi2556g00031 425 FunFam Casein kinase II subunit alpha 203 414 - -
Gabi2556g00031 425 ProSitePatterns Serine/Threonine protein kinases active-site signature. 239 251 IPR008271 GO:0004672|GO:0006468
Gabi2556g00031 425 Gene3D Phosphorylase Kinase; domain 1 126 202 - -
Gabi2556g00031 425 Pfam Protein kinase domain 126 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2556g00031 425 ProSiteProfiles Protein kinase domain profile. 126 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2556g00031 425 CDD STKc_CK2_alpha 107 411 IPR045216 GO:0004674|GO:0006468
Gabi2556g00031 425 Gene3D Transferase(Phosphotransferase) domain 1 203 411 - -
Gabi2556g00031 425 FunFam Casein kinase II subunit alpha 112 202 - -
Gabi2556g00031 425 PANTHER CASEIN KINASE II SUBUNIT ALPHA 80 421 IPR045216 GO:0004674|GO:0006468
Gabi2556g00031 425 SMART serkin_6 126 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2556g00031 425 ProSitePatterns Protein kinases ATP-binding region signature. 132 155 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2556g00031 Gabi-Chr2556 302915 311114 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2556g00031 124 414 Core Cell Cycle Gene Families AT1G76540 30.696 1.94e-41 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Gabi2556g00031 Pkinase 1.5e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2556g00031 K03097 - gmx:100776388 702.975