Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gabi2556g00023 | ATGCAGGAGAAGCTGAGGGTTGCTGTTTTGGTTTCCAAAGCTGCATTTCAATTTATTCAAGCAGGTGTACAACCAAGCGATTACGTTGTACCTGAGGAAGTTAAAGCCGCAGGTTTCCAAGTATGTGCTGATGAATTAGGGTCTATTGTTGAATCCCACGATGTAAAGAAGCTCAAGTTTCACGGTGGAGTCAGTGGTATAGCAGAAAAGCTTTCAACATCAACCACTAAGGGGCTTAGTGGTGATTCTAATTCGCGGCTTGTGAGACAAGAGATTTATGGAGTCAATAAATTCACTGAAAGTGAAGTTCGGAGTTTCTGGGTTTTTGTTTTTGAAGCCCTTCAAGACATGACTCTCATGATCCTTGGAGTGTGTGCTTTTGTGTCTCTGATAGTTGGCGTAGCAACAGAAGGATGGCCCAAAGGTGCTCATGATGGTCTTGGAATTGTTGCAAGTATCTTCCTGGTTGTCTTTGTGACAGCAACAAGTGATTATCGCCAATCATTACAATTCAAGGATTTAGATAAGGAGAAGAAAAAGATTTCCATTCAGGTTACAAGAAATGGTTATAGGCAGAAAATGTCAATATATAATTTACTTGCTGGTGATATTGTGCATCTTGCCATTGGTGACCAAGTCCCTGCAGATGGTTTATTTGTTTCAGGATTTTCTGTGTTGATTGATGAGTCAAGTTTAACTGGTGAGAGTGAGCCAGTGATGGTGACTTCCCAAAATCCATTTCTTCTTTCTGGAACCAAGGTTCAAGATGGATCATGTACTATGTTGGTTACCACTGTTGGGATGAGGACTCAATGGGGTAAGTTGATGGCAACTCTAAGTGAAGGTGGAGATGATGAAACACCATTGCAAGTCAAACTGAATGGAGTGGCAACTATTATTGGGAAGATAGGACTATTCTTTGCTGTGGTTACTTTTGCAGTTTTGGTTAAAGGACTCATGAGCCGCAAACTCCAACAAGGAAGATTCTTTAGGTGGTCTGCGGATGATGCAATGGAGCTGTTGGAATTTTTTGCTATTGCAGTTACAATTGTTGTTGTTGCAGTTCCTGAGGGACTACCATTGGCTGTGACATTGAGCCTTGCATTTGCAATGAAGAAGATGATGAATGACAAAGCACTTGTTAGGAATTTGGCAGCTTGTGAGACAATGGGATCAGCTACAACTATATGTAGTGACAAGACTGGGACACTAACAACAAACCGCATGACTGTAGTGAAAACATGCATTTGTATGAATAGTAAGGAAGTCAACAGCAATGATTCTAGTTTGTGTTCTGAACTCCCAGATTCTGCTGTGAAACTTTTGCTGCAGTCAATATTTAACAACACTGGAGGAGAGGTTGTGGTTAACAAAAAGGGTAAACGTGAGATCTTGGGGACACCAACAGAGTCAGCAATATTGCAATTTGGGTTATCACTGGGTGGGGATTTTCAGGCAGAGAAAGAAGCATGTAAACTTGTTAAAGTTGAGCCATTCAACTCAGAGAAGAAAAGAATGGGTGTAGTTTTGGAGCTACCCGAAGGAGGTTTACGAGCACATTGTAAAGGTGCTTCTGAAATAATTCTGGCTGCTTGTGACAAGGTGATAAACTCAAATGGTGATGTTGTTTCCCTTGATGAAGAATCAAGTAATTATCTTACGAGTACAATCAACCAGTTTGCTAGTGAGGCACTTAGAACTCTTTGCCTTGCTTATATTGAATTGGAAAACGGGTTCTCTGCTGAAGACCCCATTCCTGTTTCTGGTTACACTTGTATAGGAGTTGTTGGTATCAAAGATCCTGTTCGTCCTGGTGTTAAGGAATCGGTTGCAGTGTGTCGTTCTGCTGGAATAATGGTAAGAATGGTCACAGGAGACAATATTAATACTGCAAAGGCTATAGCCAGGGAATGTGGTATTTTAACAGATGATGGCATAGCCATTGAAGGTCCAGACTTTAGAGAGAAGACTCAGGAGGAATTGTTTGAACTGATTCCCAAAATTCAGGTTATGGCTCGATCCTCACCTTTAGACAAACATACATTGGTAAAACACCTGCGTACCACGTTCGGGGAAGTTGTAGCCGTAACTGGTGATGGAACAAATGATGCTCCAGCCCTTCATGAAGCTGACATTGGACTTGCAATGGGAATTGCAGGAACTGAGGTTGCTAAAGAAAGTGCAGATGTCATTATTCTAGACGATAATTTCTCCACAATAGTGACAGTGGCCAAATGGGGACGTTCAGTTTACATAAATATTCAGAAATTTGTACAGTTTCAGCTAACTGTAAATGTGGTGGCATTACTAGTGAACTTCTCATCAGCCTGCTTGACAGGCAGTGCACCCCTCACGGCTGTTCAACTTTTGTGGGTGAATATGATAATGGACACGCTGGGAGCACTTGCACTTGCAACTGAACCTCCAACTGATGATCTAATGAAGCGTTCACCAGTTGGAAGGAAGGGGGATTTTATCAACAATGTCATGTGGAGGAATATCTTAGGACAATCATTGTATCAGTTTGTGGTTATATGGTTTCTTCAGACAATGGGAAAATGGATATTTTTTCTAAGGGGGCCAAACGCTGATTTAGTCTTGAACACACTTATTTTCAACTCATTTGTCTTCTGTCAGGTTTTTAATGAGATAAACTCTCGTGAGATGGAGGAACTAGATGTTTTTAAGGGCATATGGGACAATCATGTGTTCGTGGTTGTCATTGGTTGCACTGTTTTCTTTCAAATCATAATAGTTGAGTACTTGGGCACCTTTGCAAACACAACACCTCTCTCTCTGGTACAGTGGATATTTTGCTTATCGGTTGGATATATGGGCATGCCAATTGCCACTCACTTAAAACAGATCCCTGTCTGA | 2877 | 0.4133 | MQEKLRVAVLVSKAAFQFIQAGVQPSDYVVPEEVKAAGFQVCADELGSIVESHDVKKLKFHGGVSGIAEKLSTSTTKGLSGDSNSRLVRQEIYGVNKFTESEVRSFWVFVFEALQDMTLMILGVCAFVSLIVGVATEGWPKGAHDGLGIVASIFLVVFVTATSDYRQSLQFKDLDKEKKKISIQVTRNGYRQKMSIYNLLAGDIVHLAIGDQVPADGLFVSGFSVLIDESSLTGESEPVMVTSQNPFLLSGTKVQDGSCTMLVTTVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLFFAVVTFAVLVKGLMSRKLQQGRFFRWSADDAMELLEFFAIAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRNLAACETMGSATTICSDKTGTLTTNRMTVVKTCICMNSKEVNSNDSSLCSELPDSAVKLLLQSIFNNTGGEVVVNKKGKREILGTPTESAILQFGLSLGGDFQAEKEACKLVKVEPFNSEKKRMGVVLELPEGGLRAHCKGASEIILAACDKVINSNGDVVSLDEESSNYLTSTINQFASEALRTLCLAYIELENGFSAEDPIPVSGYTCIGVVGIKDPVRPGVKESVAVCRSAGIMVRMVTGDNINTAKAIARECGILTDDGIAIEGPDFREKTQEELFELIPKIQVMARSSPLDKHTLVKHLRTTFGEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIVTVAKWGRSVYINIQKFVQFQLTVNVVALLVNFSSACLTGSAPLTAVQLLWVNMIMDTLGALALATEPPTDDLMKRSPVGRKGDFINNVMWRNILGQSLYQFVVIWFLQTMGKWIFFLRGPNADLVLNTLIFNSFVFCQVFNEINSREMEELDVFKGIWDNHVFVVVIGCTVFFQIIIVEYLGTFANTTPLSLVQWIFCLSVGYMGMPIATHLKQIPV | 958 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gabi2556g00023 | 958 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 399 | 405 | IPR018303 | - | |
| Gabi2556g00023 | 958 | SUPERFAMILY | Calcium ATPase, transduction domain A | 183 | 277 | IPR008250 | - | |
| Gabi2556g00023 | 958 | SUPERFAMILY | HAD-like | 395 | 802 | IPR036412 | - | |
| Gabi2556g00023 | 958 | PANTHER | CATION TRANSPORTING ATPASE | 38 | 957 | - | - | |
| Gabi2556g00023 | 958 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 403 | 606 | IPR023299 | GO:0000166 | |
| Gabi2556g00023 | 958 | FunFam | Calcium-transporting ATPase | 160 | 280 | - | - | |
| Gabi2556g00023 | 958 | FunFam | Calcium-transporting ATPase | 714 | 958 | - | - | |
| Gabi2556g00023 | 958 | Gene3D | - | 394 | 742 | IPR023214 | - | |
| Gabi2556g00023 | 958 | PRINTS | P-type cation-transporting ATPase superfamily signature | 697 | 716 | - | - | |
| Gabi2556g00023 | 958 | PRINTS | P-type cation-transporting ATPase superfamily signature | 594 | 605 | - | - | |
| Gabi2556g00023 | 958 | PRINTS | P-type cation-transporting ATPase superfamily signature | 616 | 626 | - | - | |
| Gabi2556g00023 | 958 | PRINTS | P-type cation-transporting ATPase superfamily signature | 228 | 242 | - | - | |
| Gabi2556g00023 | 958 | PRINTS | P-type cation-transporting ATPase superfamily signature | 397 | 411 | - | - | |
| Gabi2556g00023 | 958 | PRINTS | P-type cation-transporting ATPase superfamily signature | 721 | 733 | - | - | |
| Gabi2556g00023 | 958 | FunFam | Calcium-transporting ATPase | 407 | 601 | - | - | |
| Gabi2556g00023 | 958 | Pfam | Cation transport ATPase (P-type) | 457 | 535 | - | - | |
| Gabi2556g00023 | 958 | Pfam | Cation transporting ATPase, C-terminus | 782 | 954 | IPR006068 | - | |
| Gabi2556g00023 | 958 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 61 | 957 | IPR023298 | - | |
| Gabi2556g00023 | 958 | Gene3D | - | 88 | 280 | - | - | |
| Gabi2556g00023 | 958 | Gene3D | - | 407 | 601 | IPR023299 | GO:0000166 | |
| Gabi2556g00023 | 958 | Gene3D | - | 112 | 949 | - | - | |
| Gabi2556g00023 | 958 | CDD | P-type_ATPase_Ca_PMCA-like | 89 | 830 | - | - | |
| Gabi2556g00023 | 958 | Pfam | E1-E2 ATPase | 181 | 375 | - | - | |
| Gabi2556g00023 | 958 | NCBIfam | calcium-translocating P-type ATPase, PMCA-type | 51 | 958 | IPR006408 | GO:0005388|GO:0005524|GO:0016020|GO:0070588 | |
| Gabi2556g00023 | 958 | PRINTS | H+-transporting ATPase (proton pump) signature | 553 | 571 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Gabi2556g00023 | 958 | PRINTS | H+-transporting ATPase (proton pump) signature | 729 | 754 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Gabi2556g00023 | 958 | PRINTS | H+-transporting ATPase (proton pump) signature | 697 | 713 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Gabi2556g00023 | 958 | SFLD | Haloacid Dehalogenase | 379 | 749 | - | - | |
| Gabi2556g00023 | 958 | SFLD | p-type atpase | 379 | 749 | IPR044492 | - | |
| Gabi2556g00023 | 958 | Pfam | Cation transporter/ATPase, N-terminus | 61 | 129 | IPR004014 | - | |
| Gabi2556g00023 | 958 | FunFam | Calcium-transporting ATPase | 590 | 742 | - | - | |
| Gabi2556g00023 | 958 | NCBIfam | HAD-IC family P-type ATPase | 668 | 780 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Gabi2556g00023 | 958 | NCBIfam | HAD-IC family P-type ATPase | 489 | 642 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Gabi2556g00023 | 958 | NCBIfam | HAD-IC family P-type ATPase | 337 | 431 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gabi2556g00023 | Gabi-Chr2556 | 173796 | 177575 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gabi2556g00023 | 2 | 958 | Primary Pumps ATPases | AT4G37640 | 82.046 | 0.0 | 1606 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gabi2556g00023 | K01537 | - | gmx:100776926 | 1730.3 |