Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2556g00021 ATGGAGAGTTATTTAAATGAGAATTTTGGTGGGGTGAAGTCCAAGAACTCTCCAGAAGAGGCTCTTGGAAAATGGAGGAAATTATGTGGGGTTGTAAAGAACCCCAAAAGACGTTTTCGTTTCACTGCCAACCTCTCCAAGAGGTACGAAGCAGCTGCTATGCGTCGTACCAATCAGGAGAAGCTGAGGGTTGCTGTTTTGGTTTCCAAAGCTGCATTTCAATTTATTCAAGGCAACGATTACGTTGTACCTGAGGAAGTTAAAGCCGCAGGTTTCCAAGTATGTGCTGATGAATTAGGGTCTATTGTTGAATCCCACGATGTAAAGAAGCTCAAGTTTCACGGTGGAGTCAGTGGTATAGCAGAAAAGCTTTCAACATCAACCACTAAGGGGCTTAGTGGTGATTCTAATTCGCGGCTTGTGAGACAAGAGATTTATGGAGTCAATAAATTCACTGAAAGTGAAGTTCGGAGTTTCTGGGTTTTTGTTTTTGAAGCCCTTCAAGACATGACTCTCATGATCCTTGGAGTGTGTGCTTTTGTGTCTCTGATAGTTGGCGTAGCAACAGAAGGATGGCCCAAAGGTGCTCATGATGGTCTTGGAATTGTTGCAAGTATCTTCCTGGTTGTCTTTGTGACAGCAACAAGTGATTATCGCCAATCATTACAATTCAAGGATTTAGATAAGGAGAAGAAAAAGATTTCCATTCAGGTTACAAGAAATGGTTATAGGCAGAAAATGTCAATATATAATTTACTTGCTGGTGATATTGTGCATCTTGCCATTGGTGACCAAGTCCCTGCAGATGGTTTATTTGTTTCAGGATTTTCTGTGTTGATTGATGAGTCAAGTTTAACTGGTGAGAGTGAGCCAGTGATGGTGACTTCCCAAAATCCATTTCTTCTTTCTGGAACCAAGGTTCAAGATGGATCATGTACTATGTTGGTTACCACTGTTGGGATGAGGACTCAATGGGGTAAGTTGATGGCAACTCTAAGTGAAGGTGGAGATGATGAAACACCATTGCAAGTCAAACTGAATGGAGTGGCAACTATTATTGGGAAGATAGGACTATTCTTTGCTGTGGTTACTTTTGCAGTTTTGGTTAAAGGACTCATGAGCCGCAAACTCCAACAAGGAAGATTCTTTAGGTGGTCTGCGGATGATGCAATGGAGCTGTTGGAATTTTTTGCTATTGCAGTTACAATTGTTGTTGTTGCAGTTCCTGAGGGACTACCATTGGCTGTGACATTGAGCCTTGCATTTGCAATGAAGAAGATGATGAATGACAAAGCACTTGTTAGGAATTTGGCAGCTTGTGAGACAATGGGATCAGCTACAACTATATGTAGTGACAAGACTGGGACACTAACAACAAACCGCATGACTGTAGTGAAAACATGCATTTGTATGAATAGTAAGGAAGTCAACAGCAATGATTCTAGTTTGTGTTCTGAACTCCCAGATTCTGCTGTGAAACTTTTGCTGCAGTCAATATTTAACAACACTGGAGGAGAGGTTGTGGTTAACAAAAAGGGTAAACGTGAGATCTTGGGGACACCAACAGAGTCAGCAATATTGCAATTTGGGTTATCACTGGGTGGGGATTTTCAGGCAGAGAAAGAAGCATGTAAACTTGTTAAAGTTGAGCCATTCAACTCAGAGAAGAAAAGAATGGGTGTAGTTTTGGAGCTACCCGAAGGAGGTTTACGAGCACATTGTAAAGGTGCTTCTGAAATAATTCTGGCTGCTTGTGACAAGGTGATAAACTCAAATGGTGATGTTGTTTCCCTTGATGAAGAATCAAGTAATTATCTTACGAGTACAATCAACCAGTTTGCTAGTGAGGCACTTAGAACTCTTTGCCTTGCTTATATTGAATTGGAAAACGGGTTCTCTGCTGAAGACCCCATTCCTGTTTCTGGTTACACTTGTATAGGAGTTGTTGGTATCAAAGATCCTGTTCGTCCTGGTGTTAAGGAATCGGTTGCAGTGTGTCGTTCTGCTGGAATAATGGTAAGAATGGTCACAGGAGACAATATTAATACTGCAAAGGCTATAGCCAGGGAATGTGGTATTTTAACAGATGATGGCATAGCCATTGAAGGTCCAGACTTTAGAGAGAAGACTCAGGAGGAATTGTTTGAACTGATTCCCAAAATTCAGGTTATGGCTCGATCCTCACCTTTAGACAAACATACATTGGTAAAACACCTGCGTACCACGTTCGGGGAAGTTGTAGCCGTAACTGGTGATGGAACAAATGATGCTCCAGCCCTTCATGAAGCTGACATTGGACTTGCAATGGGAATTGCAGGAACTGAGGTTGCTAAAGAAAGTGCAGATGTCATTATTCTAGACGATAATTTCTCCACAATAGTGACAGTGGCCAAATGGGGACGTTCAGTTTACATAAATATTCAGAAATTTGTACAGTTTCAGCTAACTGTAAATGTGGTGGCATTACTAGTGAACTTCTCATCAGCCTGCTTGACAGGCAGTGCACCCCTCACGGCTGTTCAACTTTTGTGGGTGAATATGATAATGGACACGCTGGGAGCACTTGCACTTGCAACTGAACCTCCAACTGATGATCTAATGAAGCGTTCACCAGTTGGAAGGAAGGGGGATTTTATCAACAATGTCATGTGGAGGAATATCTTAGGACAATCATTGTATCAGTTTGTGGTTATATGGTTTCTTCAGACAATGGGAAAATGGATATTTTTTCTAAGGGGGCCAAACGCTGATTTAGTCTTGAACACACTTATTTTCAACTCATTTGTCTTCTGTCAGGTTTTTAATGAGATAAACTCTCGTGAGATGGAGGAACTAGATGTTTTTAAGGGCATATGGGACAATCATGTGTTCGTGGTTGTCATTGGTTGCACTGTTTTCTTTCAAATCATAATAGTTGAGTACTTGGGCACCTTTGCAAACACAACACCTCTCTCTCTGGTACAGTGGATATTTTGCTTATCGGTTGGATATATGGGCATGCCAATTGCCACTCACTTAAAACAGATCCCTGTCTGA 3036 0.4147 MESYLNENFGGVKSKNSPEEALGKWRKLCGVVKNPKRRFRFTANLSKRYEAAAMRRTNQEKLRVAVLVSKAAFQFIQGNDYVVPEEVKAAGFQVCADELGSIVESHDVKKLKFHGGVSGIAEKLSTSTTKGLSGDSNSRLVRQEIYGVNKFTESEVRSFWVFVFEALQDMTLMILGVCAFVSLIVGVATEGWPKGAHDGLGIVASIFLVVFVTATSDYRQSLQFKDLDKEKKKISIQVTRNGYRQKMSIYNLLAGDIVHLAIGDQVPADGLFVSGFSVLIDESSLTGESEPVMVTSQNPFLLSGTKVQDGSCTMLVTTVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLFFAVVTFAVLVKGLMSRKLQQGRFFRWSADDAMELLEFFAIAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRNLAACETMGSATTICSDKTGTLTTNRMTVVKTCICMNSKEVNSNDSSLCSELPDSAVKLLLQSIFNNTGGEVVVNKKGKREILGTPTESAILQFGLSLGGDFQAEKEACKLVKVEPFNSEKKRMGVVLELPEGGLRAHCKGASEIILAACDKVINSNGDVVSLDEESSNYLTSTINQFASEALRTLCLAYIELENGFSAEDPIPVSGYTCIGVVGIKDPVRPGVKESVAVCRSAGIMVRMVTGDNINTAKAIARECGILTDDGIAIEGPDFREKTQEELFELIPKIQVMARSSPLDKHTLVKHLRTTFGEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIVTVAKWGRSVYINIQKFVQFQLTVNVVALLVNFSSACLTGSAPLTAVQLLWVNMIMDTLGALALATEPPTDDLMKRSPVGRKGDFINNVMWRNILGQSLYQFVVIWFLQTMGKWIFFLRGPNADLVLNTLIFNSFVFCQVFNEINSREMEELDVFKGIWDNHVFVVVIGCTVFFQIIIVEYLGTFANTTPLSLVQWIFCLSVGYMGMPIATHLKQIPV 1011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2556g00021 1011 Pfam Cation transporter/ATPase, N-terminus 114 182 IPR004014 -
Gabi2556g00021 1011 PRINTS H+-transporting ATPase (proton pump) signature 782 807 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi2556g00021 1011 PRINTS H+-transporting ATPase (proton pump) signature 750 766 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi2556g00021 1011 PRINTS H+-transporting ATPase (proton pump) signature 606 624 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi2556g00021 1011 Gene3D - 460 654 IPR023299 GO:0000166
Gabi2556g00021 1011 Gene3D - 447 795 IPR023214 -
Gabi2556g00021 1011 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 456 659 IPR023299 GO:0000166
Gabi2556g00021 1011 FunFam Calcium-transporting ATPase 17 77 - -
Gabi2556g00021 1011 FunFam Calcium-transporting ATPase 213 333 - -
Gabi2556g00021 1011 Pfam E1-E2 ATPase 234 428 - -
Gabi2556g00021 1011 FunFam Calcium-transporting ATPase 643 795 - -
Gabi2556g00021 1011 NCBIfam calcium-translocating P-type ATPase, PMCA-type 104 1011 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Gabi2556g00021 1011 PANTHER CATION TRANSPORTING ATPASE 63 1010 - -
Gabi2556g00021 1011 Pfam Cation transporting ATPase, C-terminus 835 1007 IPR006068 -
Gabi2556g00021 1011 Gene3D - 17 77 - -
Gabi2556g00021 1011 NCBIfam HAD-IC family P-type ATPase 542 695 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi2556g00021 1011 NCBIfam HAD-IC family P-type ATPase 721 833 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi2556g00021 1011 NCBIfam HAD-IC family P-type ATPase 390 484 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi2556g00021 1011 SUPERFAMILY HAD-like 448 855 IPR036412 -
Gabi2556g00021 1011 SFLD Haloacid Dehalogenase 432 802 - -
Gabi2556g00021 1011 ProSitePatterns E1-E2 ATPases phosphorylation site. 452 458 IPR018303 -
Gabi2556g00021 1011 PRINTS P-type cation-transporting ATPase superfamily signature 450 464 - -
Gabi2556g00021 1011 PRINTS P-type cation-transporting ATPase superfamily signature 647 658 - -
Gabi2556g00021 1011 PRINTS P-type cation-transporting ATPase superfamily signature 774 786 - -
Gabi2556g00021 1011 PRINTS P-type cation-transporting ATPase superfamily signature 750 769 - -
Gabi2556g00021 1011 PRINTS P-type cation-transporting ATPase superfamily signature 669 679 - -
Gabi2556g00021 1011 PRINTS P-type cation-transporting ATPase superfamily signature 281 295 - -
Gabi2556g00021 1011 Pfam Ca2+-ATPase N terminal autoinhibitory domain 5 50 IPR024750 GO:0005516
Gabi2556g00021 1011 Gene3D - 141 333 - -
Gabi2556g00021 1011 FunFam Calcium-transporting ATPase 460 654 - -
Gabi2556g00021 1011 SFLD p-type atpase 432 802 IPR044492 -
Gabi2556g00021 1011 Gene3D - 165 1002 - -
Gabi2556g00021 1011 SUPERFAMILY Calcium ATPase, transmembrane domain M 114 1010 IPR023298 -
Gabi2556g00021 1011 Pfam Cation transport ATPase (P-type) 510 588 - -
Gabi2556g00021 1011 CDD P-type_ATPase_Ca_PMCA-like 142 883 - -
Gabi2556g00021 1011 FunFam Calcium-transporting ATPase 767 1011 - -
Gabi2556g00021 1011 SUPERFAMILY Calcium ATPase, transduction domain A 236 330 IPR008250 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2556g00021 Gabi-Chr2556 171602 177575 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2556g00021 1 1011 Primary Pumps ATPases AT4G37640 82.069 0.0 1701
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2556g00021 K01537 - gmx:100776926 1825.06