Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2556g00020 ATGGAGAGTTATTTAAATGAGAATTTTGGTGGGGTGAAGTCCAAGAACTCTCCAGAAGAGGCTCTTGGAAAATGGAGGAAATTATGTGGGGTTGTAAAGAACCCCAAAAGACGTTTTCGTTTCACTGCCAACCTCTCCAAGAGGTACGAAGCAGCTGCTATGCGTCGTACCAATCAGGAGAAGCTGAGGGTTGCTGTTTTGGTTTCCAAAGCTGCATTTCAATTTATTCAAGGCAAGTTTCTCAAGAACTCAAGCGATTACGTTGTACCTGAGGAAGTTAAAGCCGCAGGTTTCCAAGTATGTGCTGATGAATTAGGGTCTATTGTTGAATCCCACGATGTAAAGAAGCTCAAGTTTCACGGTGGAGTCAGTGGTATAGCAGAAAAGCTTTCAACATCAACCACTAAGGGGCTTAGTGGTGATTCTAATTCGCGGCTTGTGAGACAAGAGATTTATGGAGTCAATAAATTCACTGAAAGTGAAGTTCGGAGTTTCTGGGTTTTTGTTTTTGAAGCCCTTCAAGACATGACTCTCATGATCCTTGGAGTGTGTGCTTTTGTGTCTCTGATAGTTGGCGTAGCAACAGAAGGATGGCCCAAAGGTGCTCATGATGGTCTTGGAATTGTTGCAAGTATCTTCCTGGTTGTCTTTGTGACAGCAACAAGTGATTATCGCCAATCATTACAATTCAAGGATTTAGATAAGGAGAAGAAAAAGATTTCCATTCAGGTTACAAGAAATGGTTATAGGCAGAAAATGTCAATATATAATTTACTTGCTGGTGATATTGTGCATCTTGCCATTGGTGACCAAGTCCCTGCAGATGGTTTATTTGTTTCAGGATTTTCTGTGTTGATTGATGAGTCAAGTTTAACTGGTGAGAGTGAGCCAGTGATGGTGACTTCCCAAAATCCATTTCTTCTTTCTGGAACCAAGGTTCAAGATGGATCATGTACTATGTTGGTTACCACTGTTGGGATGAGGACTCAATGGGGTAAGTTGATGGCAACTCTAAGTGAAGGTGGAGATGATGAAACACCATTGCAAGTCAAACTGAATGGAGTGGCAACTATTATTGGGAAGATAGGACTATTCTTTGCTGTGGTTACTTTTGCAGTTTTGGTTAAAGGACTCATGAGCCGCAAACTCCAACAAGGAAGATTCTTTAGGTGGTCTGCGGATGATGCAATGGAGCTGTTGGAATTTTTTGCTATTGCAGTTACAATTGTTGTTGTTGCAGTTCCTGAGGGACTACCATTGGCTGTGACATTGAGCCTTGCATTTGCAATGAAGAAGATGATGAATGACAAAGCACTTGTTAGGAATTTGGCAGCTTGTGAGACAATGGGATCAGCTACAACTATATGTAGTGACAAGACTGGGACACTAACAACAAACCGCATGACTGTAGTGAAAACATGCATTTGTATGAATAGTAAGGAAGTCAACAGCAATGATTCTAGTTTGTGTTCTGAACTCCCAGATTCTGCTGTGAAACTTTTGCTGCAGTCAATATTTAACAACACTGGAGGAGAGGTTGTGGTTAACAAAAAGGGTAAACGTGAGATCTTGGGGACACCAACAGAGTCAGCAATATTGCAATTTGGGTTATCACTGGGTGGGGATTTTCAGGCAGAGAAAGAAGCATGTAAACTTGTTAAAGTTGAGCCATTCAACTCAGAGAAGAAAAGAATGGGTGTAGTTTTGGAGCTACCCGAAGGAGGTTTACGAGCACATTGTAAAGGTGCTTCTGAAATAATTCTGGCTGCTTGTGACAAGGTGATAAACTCAAATGGTGATGTTGTTTCCCTTGATGAAGAATCAAGTAATTATCTTACGAGTACAATCAACCAGTTTGCTAGTGAGGCACTTAGAACTCTTTGCCTTGCTTATATTGAATTAGGTCCAGACTTTAGAGAGAAGACTCAGGAGGAATTGTTTGAACTGATTCCCAAAATTCAGGTTATGGCTCGATCCTCACCTTTAGACAAACATACATTGGTAAAACACCTGCGTACCACGTTCGGGGAAGTTGTAGCCGTAACTGGTGATGGAACAAATGATGCTCCAGCCCTTCATGAAGCTGACATTGGACTTGCAATGGGAATTGCAGGAACTGAGGTTGCTAAAGAAAGTGCAGATGTCATTATTCTAGACGATAATTTCTCCACAATAGTGACAGTGGCCAAATGGGGACGTTCAGTTTACATAAATATTCAGAAATTTGTACAGTTTCAGCTAACTGTAAATGTGGTGGCATTACTAGTGAACTTCTCATCAGCCTGCTTGACAGGCAGTGCACCCCTCACGGCTGTTCAACTTTTGTGGGTGAATATGATAATGGACACGCTGGGAGCACTTGCACTTGCAACTGAACCTCCAACTGATGATCTAATGAAGCGTTCACCAGTTGGAAGGAAGGGGGATTTTATCAACAATGTCATGTGGAGGAATATCTTAGGACAATCATTGTATCAGTTTGTGGTTATATGGTTTCTTCAGACAATGGGAAAATGGATATTTTTTCTAAGGGGGCCAAACGCTGATTTAGTCTTGAACACACTTATTTTCAACTCATTTGTCTTCTGTCAGGTTTTTAATGAGATAAACTCTCGTGAGATGGAGGAACTAGATGTTTTTAAGGGCATATGGGACAATCATGTGTTCGTGGTTGTCATTGGTTGCACTGTTTTCTTTCAAATCATAATAGTTGAGTACTTGGGCACCTTTGCAAACACAACACCTCTCTCTCTGGTACAGTGGATATTTTGCTTATCGGTTGGATATATGGGCATGCCAATTGCCACTCACTTAAAACAGATCCCTGTCTGA 2832 0.4131 MESYLNENFGGVKSKNSPEEALGKWRKLCGVVKNPKRRFRFTANLSKRYEAAAMRRTNQEKLRVAVLVSKAAFQFIQGKFLKNSSDYVVPEEVKAAGFQVCADELGSIVESHDVKKLKFHGGVSGIAEKLSTSTTKGLSGDSNSRLVRQEIYGVNKFTESEVRSFWVFVFEALQDMTLMILGVCAFVSLIVGVATEGWPKGAHDGLGIVASIFLVVFVTATSDYRQSLQFKDLDKEKKKISIQVTRNGYRQKMSIYNLLAGDIVHLAIGDQVPADGLFVSGFSVLIDESSLTGESEPVMVTSQNPFLLSGTKVQDGSCTMLVTTVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLFFAVVTFAVLVKGLMSRKLQQGRFFRWSADDAMELLEFFAIAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRNLAACETMGSATTICSDKTGTLTTNRMTVVKTCICMNSKEVNSNDSSLCSELPDSAVKLLLQSIFNNTGGEVVVNKKGKREILGTPTESAILQFGLSLGGDFQAEKEACKLVKVEPFNSEKKRMGVVLELPEGGLRAHCKGASEIILAACDKVINSNGDVVSLDEESSNYLTSTINQFASEALRTLCLAYIELGPDFREKTQEELFELIPKIQVMARSSPLDKHTLVKHLRTTFGEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIVTVAKWGRSVYINIQKFVQFQLTVNVVALLVNFSSACLTGSAPLTAVQLLWVNMIMDTLGALALATEPPTDDLMKRSPVGRKGDFINNVMWRNILGQSLYQFVVIWFLQTMGKWIFFLRGPNADLVLNTLIFNSFVFCQVFNEINSREMEELDVFKGIWDNHVFVVVIGCTVFFQIIIVEYLGTFANTTPLSLVQWIFCLSVGYMGMPIATHLKQIPV 943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2556g00020 943 SUPERFAMILY Calcium ATPase, transmembrane domain M 120 942 IPR023298 -
Gabi2556g00020 943 Gene3D - 171 508 - -
Gabi2556g00020 943 PRINTS Sodium/potassium-transporting ATPase signature 449 470 - -
Gabi2556g00020 943 PRINTS Sodium/potassium-transporting ATPase signature 206 226 - -
Gabi2556g00020 943 PRINTS Sodium/potassium-transporting ATPase signature 578 596 - -
Gabi2556g00020 943 NCBIfam HAD-IC family P-type ATPase 396 490 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi2556g00020 943 NCBIfam HAD-IC family P-type ATPase 653 765 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi2556g00020 943 Pfam Cation transporter/ATPase, N-terminus 120 188 IPR004014 -
Gabi2556g00020 943 NCBIfam calcium-translocating P-type ATPase, PMCA-type 110 635 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Gabi2556g00020 943 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 462 638 IPR023299 GO:0000166
Gabi2556g00020 943 SUPERFAMILY HAD-like 631 730 IPR036412 -
Gabi2556g00020 943 Pfam Cation transporting ATPase, C-terminus 767 939 IPR006068 -
Gabi2556g00020 943 SUPERFAMILY Calcium ATPase, transduction domain A 242 336 IPR008250 -
Gabi2556g00020 943 FunFam Calcium-transporting ATPase 699 943 - -
Gabi2556g00020 943 FunFam Calcium-transporting ATPase 219 339 - -
Gabi2556g00020 943 Pfam Ca2+-ATPase N terminal autoinhibitory domain 5 50 IPR024750 GO:0005516
Gabi2556g00020 943 Gene3D - 510 651 IPR023299 GO:0000166
Gabi2556g00020 943 FunFam Calcium-transporting ATPase 17 77 - -
Gabi2556g00020 943 Gene3D - 213 314 - -
Gabi2556g00020 943 PANTHER CATION TRANSPORTING ATPASE 82 632 - -
Gabi2556g00020 943 Pfam E1-E2 ATPase 240 434 - -
Gabi2556g00020 943 Pfam Cation transport ATPase (P-type) 516 594 - -
Gabi2556g00020 943 ProSitePatterns E1-E2 ATPases phosphorylation site. 458 464 IPR018303 -
Gabi2556g00020 943 Gene3D - 17 77 - -
Gabi2556g00020 943 PRINTS P-type cation-transporting ATPase superfamily signature 456 470 - -
Gabi2556g00020 943 PRINTS P-type cation-transporting ATPase superfamily signature 287 301 - -
Gabi2556g00020 943 PRINTS P-type cation-transporting ATPase superfamily signature 706 718 - -
Gabi2556g00020 943 PRINTS P-type cation-transporting ATPase superfamily signature 682 701 - -
Gabi2556g00020 943 Gene3D - 694 942 - -
Gabi2556g00020 943 FunFam Calcium-transporting ATPase 466 652 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2556g00020 Gabi-Chr2556 171602 177575 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2556g00020 635 943 Primary Pumps ATPases AT4G37640 84.142 3.91e-180 547
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2556g00020 K01537 - gmx:100776926 1108.2