Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2556g00019 ATGGAGAGTTATTTAAATGAGAATTTTGGTGGGGTGAAGTCCAAGAACTCTCCAGAAGAGGCTCTTGGAAAATGGAGGAAATTATGTGGGGTTGTAAAGAACCCCAAAAGACGTTTTCGTTTCACTGCCAACCTCTCCAAGAGGTACGAAGCAGCTGCTATGCGTCGTACCAATCAGGAGAAGCTGAGGGTTGCTGTTTTGGTTTCCAAAGCTGCATTTCAATTTATTCAAGGCAAGTTTCTCAAGAACTCAAGCGATTACGTTGTACCTGAGGAAGTTAAAGCCGCAGGTTTCCAAGTATGTGCTGATGAATTAGGGTCTATTGTTGAATCCCACGATGTAAAGAAGCTCAAGTTTCACGGTGGAGTCAGTGGTATAGCAGAAAAGCTTTCAACATCAACCACTAAGGGGCTTAGTGGTGATTCTAATTCGCGGCTTGTGAGACAAGAGATTTATGGAGTCAATAAATTCACTGAAAGTGAAGTTCGGAGTTTCTGGGTTTTTGTTTTTGAAGCCCTTCAAGACATGACTCTCATGATCCTTGGAGTGTGTGCTTTTGTGTCTCTGATAGTTGGCGTAGCAACAGAAGGATGGCCCAAAGGTGCTCATGATGGTCTTGGAATTGTTGCAAGTATCTTCCTGGTTGTCTTTGTGACAGCAACAAGTGATTATCGCCAATCATTACAATTCAAGGATTTAGATAAGGAGAAGAAAAAGATTTCCATTCAGGTTACAAGAAATGGTTATAGGCAGAAAATGTCAATATATAATTTACTTGCTGGTGATATTGTGCATCTTGCCATTGGTGACCAAGTCCCTGCAGATGGTTTATTTGTTTCAGGATTTTCTGTGTTGATTGATGAGTCAAGTTTAACTGGTGAGAGTGAGCCAGTGATGGTGACTTCCCAAAATCCATTTCTTCTTTCTGGAACCAAGGTTCAAGATGGATCATGTACTATGTTGGTTACCACTGTTGGGATGAGGACTCAATGGGGTAAGTTGATGGCAACTCTAAGTGAAGGTGGAGATGATGAAACACCATTGCAAGTCAAACTGAATGGAGTGGCAACTATTATTGGGAAGATAGGACTATTCTTTGCTGTGGTTACTTTTGCAGTTTTGGTTAAAGGACTCATGAGCCGCAAACTCCAACAAGGAAGATTCTTTAGGTGGTCTGCGGATGATGCAATGGAGCTGTTGGAATTTTTTGCTATTGCAGTTACAATTGTTGTTGTTGCAGTTCCTGAGGGACTACCATTGGCTGTGACATTGAGCCTTGCATTTGCAATGAAGAAGATGATGAATGACAAAGCACTTGTTAGGAATTTGGCAGCTTGTGAGACAATGGGATCAGCTACAACTATATGTAGTGACAAGACTGGGACACTAACAACAAACCGCATGACTGTAGTGAAAACATGCATTTGTATGAATAGTAAGGAAGTCAACAGCAATGATTCTAGTTTGTGTTCTGAACTCCCAGATTCTGCTGTGAAACTTTTGCTGCAGTCAATATTTAACAACACTGGAGGAGAGGTTGTGGTTAACAAAAAGGGTAAACGTGAGATCTTGGGGACACCAACAGAGTCAGCAATATTGCAATTTGGGTTATCACTGGGTGGGGATTTTCAGGCAGAGAAAGAAGCATGTAAACTTGTTAAAGTTGAGCCATTCAACTCAGAGAAGAAAAGAATGGGTGTAGTTTTGGAGCTACCCGAAGGAGGTTTACGAGCACATTGTAAAGGTGCTTCTGAAATAATTCTGGCTGCTTGTGACAAGGTGATAAACTCAAATGGTGATGTTGTTTCCCTTGATGAAGAATCAAGTAATTATCTTACGAGTACAATCAACCAGTTTGCTAGTGAGGCACTTAGAACTCTTTGCCTTGCTTATATTGAATTGGAAAACGGGTTCTCTGCTGAAGACCCCATTCCTGTTTCTGGTTACACTTGTATAGGAGTTGTTGGTATCAAAGATCCTGTTCGTCCTGGTGTTAAGGAATCGGTTGCAGTGTGTCGTTCTGCTGGAATAATGGTAAGAATGGTCACAGGAGACAATATTAATACTGCAAAGGCTATAGCCAGGGAATGTGGTATTTTAACAGATGATGGCATAGCCATTGAAGGTCCAGACTTTAGAGAGAAGACTCAGGAGGAATTGTTTGAACTGATTCCCAAAATTCAGGTTATGGCTCGATCCTCACCTTTAGACAAACATACATTGGTAAAACACCTGCGTACCACGTTCGGGGAAGTTGTAGCCGTAACTGGTGATGGAACAAATGATGCTCCAGCCCTTCATGAAGCTGACATTGGACTTGCAATGGGAATTGCAGGAACTGAGGTTGCTAAAGAAAGTGCAGATGTCATTATTCTAGACGATAATTTCTCCACAATAGTGACAGTGGCCAAATGGGGACGTTCAGTTTACATAAATATTCAGAAATTTGTACAGTTTCAGCTAACTGTAAATGTGGTGGCATTACTAGTGAACTTCTCATCAGCCTGCTTGACAGGCAGTGCACCCCTCACGGCTGTTCAACTTTTGTGGGTGAATATGATAATGGACACGCTGGGAGCACTTGCACTTGCAACTGAACCTCCAACTGATGATCTAATGAAGCGTTCACCAGTTGGAAGGAAGGGGGATTTTATCAACAATGTCATGTGGAGGAATATCTTAGGACAATCATTGTATCAGTTTGTGGTTATATGGTTTCTTCAGACAATGGGAAAATGGATATTTTTTCTAAGGGGGCCAAACGCTGATTTAGTCTTGAACACACTTATTTTCAACTCATTTGTCTTCTGTCAGGTTTTTAATGAGATAAACTCTCGTGAGATGGAGGAACTAGATGTTTTTAAGGGCATATGGGACAATCATGTGTTCGTGGTTGTCATTGGTTGCACTGTTTTCTTTCAAATCATAATAGTTGAGTACTTGGGCACCTTTGCAAACACAACACCTCTCTCTCTGGTACAGTGGATATTTTGCTTATCGGTTGGATATATGGGCATGCCAATTGCCACTCACTTAAAACAGATCCCTGTCTGA 3054 0.4145 MESYLNENFGGVKSKNSPEEALGKWRKLCGVVKNPKRRFRFTANLSKRYEAAAMRRTNQEKLRVAVLVSKAAFQFIQGKFLKNSSDYVVPEEVKAAGFQVCADELGSIVESHDVKKLKFHGGVSGIAEKLSTSTTKGLSGDSNSRLVRQEIYGVNKFTESEVRSFWVFVFEALQDMTLMILGVCAFVSLIVGVATEGWPKGAHDGLGIVASIFLVVFVTATSDYRQSLQFKDLDKEKKKISIQVTRNGYRQKMSIYNLLAGDIVHLAIGDQVPADGLFVSGFSVLIDESSLTGESEPVMVTSQNPFLLSGTKVQDGSCTMLVTTVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLFFAVVTFAVLVKGLMSRKLQQGRFFRWSADDAMELLEFFAIAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRNLAACETMGSATTICSDKTGTLTTNRMTVVKTCICMNSKEVNSNDSSLCSELPDSAVKLLLQSIFNNTGGEVVVNKKGKREILGTPTESAILQFGLSLGGDFQAEKEACKLVKVEPFNSEKKRMGVVLELPEGGLRAHCKGASEIILAACDKVINSNGDVVSLDEESSNYLTSTINQFASEALRTLCLAYIELENGFSAEDPIPVSGYTCIGVVGIKDPVRPGVKESVAVCRSAGIMVRMVTGDNINTAKAIARECGILTDDGIAIEGPDFREKTQEELFELIPKIQVMARSSPLDKHTLVKHLRTTFGEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIVTVAKWGRSVYINIQKFVQFQLTVNVVALLVNFSSACLTGSAPLTAVQLLWVNMIMDTLGALALATEPPTDDLMKRSPVGRKGDFINNVMWRNILGQSLYQFVVIWFLQTMGKWIFFLRGPNADLVLNTLIFNSFVFCQVFNEINSREMEELDVFKGIWDNHVFVVVIGCTVFFQIIIVEYLGTFANTTPLSLVQWIFCLSVGYMGMPIATHLKQIPV 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2556g00019 1017 FunFam Calcium-transporting ATPase 466 660 - -
Gabi2556g00019 1017 Gene3D - 147 339 - -
Gabi2556g00019 1017 FunFam Calcium-transporting ATPase 17 77 - -
Gabi2556g00019 1017 SFLD Haloacid Dehalogenase 438 808 - -
Gabi2556g00019 1017 Pfam Ca2+-ATPase N terminal autoinhibitory domain 5 50 IPR024750 GO:0005516
Gabi2556g00019 1017 SUPERFAMILY HAD-like 454 861 IPR036412 -
Gabi2556g00019 1017 Pfam E1-E2 ATPase 240 434 - -
Gabi2556g00019 1017 SFLD p-type atpase 438 808 IPR044492 -
Gabi2556g00019 1017 Gene3D - 17 77 - -
Gabi2556g00019 1017 Pfam Cation transport ATPase (P-type) 516 594 - -
Gabi2556g00019 1017 FunFam Calcium-transporting ATPase 773 1017 - -
Gabi2556g00019 1017 Pfam Cation transporting ATPase, C-terminus 841 1013 IPR006068 -
Gabi2556g00019 1017 PRINTS H+-transporting ATPase (proton pump) signature 788 813 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi2556g00019 1017 PRINTS H+-transporting ATPase (proton pump) signature 756 772 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi2556g00019 1017 PRINTS H+-transporting ATPase (proton pump) signature 612 630 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi2556g00019 1017 FunFam Calcium-transporting ATPase 219 339 - -
Gabi2556g00019 1017 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 462 665 IPR023299 GO:0000166
Gabi2556g00019 1017 CDD P-type_ATPase_Ca_PMCA-like 148 889 - -
Gabi2556g00019 1017 Pfam Cation transporter/ATPase, N-terminus 120 188 IPR004014 -
Gabi2556g00019 1017 Gene3D - 453 801 IPR023214 -
Gabi2556g00019 1017 Gene3D - 466 660 IPR023299 GO:0000166
Gabi2556g00019 1017 Gene3D - 171 1008 - -
Gabi2556g00019 1017 PRINTS P-type cation-transporting ATPase superfamily signature 653 664 - -
Gabi2556g00019 1017 PRINTS P-type cation-transporting ATPase superfamily signature 756 775 - -
Gabi2556g00019 1017 PRINTS P-type cation-transporting ATPase superfamily signature 287 301 - -
Gabi2556g00019 1017 PRINTS P-type cation-transporting ATPase superfamily signature 780 792 - -
Gabi2556g00019 1017 PRINTS P-type cation-transporting ATPase superfamily signature 456 470 - -
Gabi2556g00019 1017 PRINTS P-type cation-transporting ATPase superfamily signature 675 685 - -
Gabi2556g00019 1017 PANTHER CATION TRANSPORTING ATPASE 77 1016 - -
Gabi2556g00019 1017 NCBIfam HAD-IC family P-type ATPase 727 839 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi2556g00019 1017 NCBIfam HAD-IC family P-type ATPase 548 701 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi2556g00019 1017 NCBIfam HAD-IC family P-type ATPase 396 490 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi2556g00019 1017 ProSitePatterns E1-E2 ATPases phosphorylation site. 458 464 IPR018303 -
Gabi2556g00019 1017 NCBIfam calcium-translocating P-type ATPase, PMCA-type 110 1017 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Gabi2556g00019 1017 SUPERFAMILY Calcium ATPase, transmembrane domain M 120 1016 IPR023298 -
Gabi2556g00019 1017 FunFam Calcium-transporting ATPase 649 801 - -
Gabi2556g00019 1017 SUPERFAMILY Calcium ATPase, transduction domain A 242 336 IPR008250 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2556g00019 Gabi-Chr2556 171602 177575 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2556g00019 1 1017 Primary Pumps ATPases AT4G37640 81.925 0.0 1701
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2556g00019 K01537 - gmx:100776926 1825.06