Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2556g00013 ATGGATACCTTGTTTAAACTAGTCAGTTTTCAAAATCAAAATCAACCTGATCCATCTCTCAACTCCACCACCAGCAGAACATCTAGCAGCTCTAGATCCTCCAGACAAAACTATCATCATTATAATTACCAGAAAGAAGACGAAGAATGCTTTAACTTTTACATGGATGAAGAAGACTTATCATCCTCTTCTTCCAAACACTACTACCCTTATGATCAGCCACACAACGCATTCACCACCGCCTTTAACACAACCACAACCACAAGCACCACCCCTACCACCACCACTGATTACTCCTTCTCACCCATCCTTGACTTCAACTTGGAATATTCCGGCAACAAGTGGGCATCCAATATCCTCCTCGAAACCGCACGCGCCATTGCCGACAAGAACAGCACACGAATCCAACAACTGATGTGGATGCTCAACGAGCTAAGCTCACCGTACGGTGACACAGATCAAAAGCTCGCCTCTCACTTCCTCCGAGCCTTGTTCAGCCGCATGACCGATGAAGGAGACCGAAACTACCGAACCTTAGCTTCGGCATCCGACAAAACATGCTCCTTCGAATCAACAAGGAAGATGTTGTTGAAGTTCCAAGAGGTTAGTCCCTGGACAACCTTCGGCCATGTCGCTTCCAATGGTGCCATCTTAGAAGCCTTAGAAGGTAACCCAAATTTACACATAGTTGATATAAGCAACACGTATTGCACCCAATGGCCAACCTTACTCGAAGCATTGGCCACTCGCAGCGACGAAACACCGCACTTAAAGTTAACCACCGTGATGACCGGCAGAGCCGGTCACCCAATCGCGGCGGTTCAGAAGGTCATGAAGGAAATAGGTACAAGAATGGAGAAATTCGCTAGGCTTATGGGTGTTCCTTTCAAATTCAATCTCATTCACCATTCTGGTGATCTTTCTAACTTCAACTTTGAAGATTTAGATATCAACGACGACGAGGCTTTGGCTATTAACTGTGTGAACGCTTTGCATTCTGTTACGGCCGTTGATAACAACCGTGACGTGTTGATATCTTCTTTTAGGAGGTTGCAGCCTAGGGTTTTGACCGTTGTTGAAGAGGAAGCTGATCTTGATGTTGGTTTCGATGGGTTTGAGTTTGTGAAAGGGTTCGAAGAATGCTTGAGATGGTTTAGGGTTTACTTTGAGGCATTGGATGAGAGCTTTGCGAGGACGAGCAGCGAGCGTTTGATGCTTGAACGTGCGGCGGGGAGAGCCATCGTTGACTTGGTGGCTTGCTCTCCTTCTTTGTCCGTTGAGCGGCGGGAGACGGCGGCGCGTTGGTCGCAGCGTCTGCATGGAAGCGGGTTCAATACTGTGCCGTTCAGCGATGAGGTTTGTGACGATGTTAGGGCGCTGTTGCGGAGGTACAAGGAGGGTTGGTCTATGGCACAGTGCTCCGACGCCGGAATATTCTTGTCGTGGAAGGACCAACCGGTGGTGTGGGCCAGTACATGGAGGCCTTGA 1488 0.4839 MDTLFKLVSFQNQNQPDPSLNSTTSRTSSSSRSSRQNYHHYNYQKEDEECFNFYMDEEDLSSSSSKHYYPYDQPHNAFTTAFNTTTTTSTTPTTTTDYSFSPILDFNLEYSGNKWASNILLETARAIADKNSTRIQQLMWMLNELSSPYGDTDQKLASHFLRALFSRMTDEGDRNYRTLASASDKTCSFESTRKMLLKFQEVSPWTTFGHVASNGAILEALEGNPNLHIVDISNTYCTQWPTLLEALATRSDETPHLKLTTVMTGRAGHPIAAVQKVMKEIGTRMEKFARLMGVPFKFNLIHHSGDLSNFNFEDLDINDDEALAINCVNALHSVTAVDNNRDVLISSFRRLQPRVLTVVEEEADLDVGFDGFEFVKGFEECLRWFRVYFEALDESFARTSSERLMLERAAGRAIVDLVACSPSLSVERRETAARWSQRLHGSGFNTVPFSDEVCDDVRALLRRYKEGWSMAQCSDAGIFLSWKDQPVVWASTWRP 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2556g00013 495 ProSiteProfiles GRAS family profile. 107 494 IPR005202 -
Gabi2556g00013 495 MobiDBLite consensus disorder prediction 11 41 - -
Gabi2556g00013 495 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 99 487 IPR005202 -
Gabi2556g00013 495 MobiDBLite consensus disorder prediction 11 38 - -
Gabi2556g00013 495 Pfam GRAS domain family 118 494 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2556g00013 Gabi-Chr2556 126800 128287 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2556g00013 1 495 GRAS Transcription Factor Family AT4G37650 58.989 0.0 585
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gabi2556g00013 GRAS 8.6e-103 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2556g00013 - - qsa:O6P43_033912 766.148