Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2556g00005 ATGGGTGCTCCTAAGCAGAAATGGACTGCAGAAGAAGAAGCAGCTCTGAAAGCTGGAGTAGTCAAACATGGGGCAGGAAAATGGCGCACTATACTTACAGACCCAGAGTTCAGTGCCATTTTGCGCATGCGTTCAAATGTAGATCTCAAGGATAAATGGAGGAATATAAATGTGACAGCAATATGGGGATCCCGGCAGAAGGCAAAGCTTGCCCTTAAAAGGAACCTACCAGCCCCCAAAATTGACAATAATAATTTGGCCTTGAGTACAGTTGTTCAACATGATGAAGTTCTCGATACTAAGCCCCTAGCAGTTTCTGGTGGAACATTGCAATCTCCTAATTCAAAAGAACAAATGTCAAGGTTGTTGGATAATCATGTATTACAGGCTATTGTCAATATGAAGGAGCCAAGGGGTTCTGATAAGGCTGCCATTGCTTCTTATATAGAGGAAAAGTATCGGTCTCCACCAAACCTCAGAAAGTTACTGTCATCAAAACTGAAGCATATGGTAGCAAGTGGCAAAATAATCAAGGAAAAACATAAGTTCAAGATTGCACCGAATTCAGCAGTCTCTGAGAAAAGAAGATGCTCCTCCTCGCTACTTCTGGAAGATAAGCCCAAAGATTCTCCAGAAGCGGAAAAGACTGATGTCAACATTCTTTCAAAATCCCAAATTGATGCAGAGCTTTCAAAAGTGAAAGGCATGACAGCTCAAGAGGCGGCTGCTGCAGCTGCAAAAGCAGTTGCGGAGGCAGAAGTTGCCATTGCACAGGCTGAGGCAGCGGCCAGGGAGGCAGAGGCTGCTGAAGCTGAGGCTGAGGCTGCTCAAGTGTTTGCAAAAGCAGCAATGAAGGCGCTAAAATGCAAAATGCTTCATATTTGA 885 0.4441 MGAPKQKWTAEEEAALKAGVVKHGAGKWRTILTDPEFSAILRMRSNVDLKDKWRNINVTAIWGSRQKAKLALKRNLPAPKIDNNNLALSTVVQHDEVLDTKPLAVSGGTLQSPNSKEQMSRLLDNHVLQAIVNMKEPRGSDKAAIASYIEEKYRSPPNLRKLLSSKLKHMVASGKIIKEKHKFKIAPNSAVSEKRRCSSSLLLEDKPKDSPEAEKTDVNILSKSQIDAELSKVKGMTAQEAAAAAAKAVAEAEVAIAQAEAAAREAEAAEAEAEAAQVFAKAAMKALKCKMLHI 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2556g00005 294 Coils Coil 242 279 - -
Gabi2556g00005 294 SUPERFAMILY Homeodomain-like 2 67 IPR009057 -
Gabi2556g00005 294 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Gabi2556g00005 294 SMART h15plus2 104 182 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gabi2556g00005 294 CDD SANT_TRF 6 57 - -
Gabi2556g00005 294 Pfam linker histone H1 and H5 family 127 180 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gabi2556g00005 294 Gene3D - 2 59 - -
Gabi2556g00005 294 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Gabi2556g00005 294 SUPERFAMILY "Winged helix" DNA-binding domain 124 196 IPR036390 -
Gabi2556g00005 294 Gene3D - 116 196 IPR036388 -
Gabi2556g00005 294 SMART sant 4 59 IPR001005 -
Gabi2556g00005 294 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 112 187 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gabi2556g00005 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Gabi2556g00005 294 PANTHER SINGLE MYB HISTONE 4 1 290 IPR044597 GO:0003691
Gabi2556g00005 294 FunFam Telomere repeat-binding factor 1 2 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2556g00005 Gabi-Chr2556 60284 67087 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2556g00005 1 291 Single Myb Histone (SMH) Gene Family AT5G67580 55.102 2.55e-81 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gabi2556g00005 Linker_histone 4.7e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2556g00005 K09422 - gmx:100779583 432.18