Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2554g00054 ATGTCATCCGAATCTGCGTCTTGGATCACCTCCCTCTCATGTACATCCCCGGTGAAGCAAATTTCAGGGGATACATTTATCTCAACTCTACCTCAATGGCTGAGGTTTATTTTTCTCTCTCCCTGTCCTCAGAGAGCTCTGTTGTCTACTGTTGATGTCCTACTATTGCTCATTTTCTTTGTGTTTGCTGTCACCAAGCTCTTTAAAAGGTTCACCACCAATGGAGGCTCCCACAATGACCTCAACAAGCCGCTTATCAGAAATAACAGGTCTTCTTACTTGACAACTATTTGGTTTAAGTTAACTTTGACTGCAACGGTTGTTTTGGCCATTTTGTACACGGTTGCTTCCATTCTGGTATTTAGCAGTTGCCCCAAGATGCCATGGATGCAAGTTGATGGAGTGTTTTGGTTAGTCCAGGCCATAACTCATGCAATACTTGCAATCTTAATCATCCACGAGAAAAGATTTGAAGCTGTTGCACACCCACTATGGCTTCGAGTTTATTGGATTGCAAATTTCATTTTCATTTCATTCTTCACAGCGTCTGGAGTTATTCGTTTGGTCTATGTGGATGTGGACGAAACCAAAGATTTCATCTTTAAGGTGGATGACGTGGTCTCTTTCATTTCATTTCCTTTGTCTCTATTTCTTCTTTTTGTTGCGGTTAAAGGATCCACTGGCATTTTGTCGGCAGCAAAAACAGAACCACTTATTGATGAGGAAACGAAGCTATATGATGATGCTCTGAGTAAATCTGAGGTTACTGGCTTTGCTTCAGCTTCTATAGTTTCCAAGGCATTTTGGATTTGGATAAATCCTTTATTGAATAAAGGGTACAAGTCGCCGTTGAAGATTGATGAGATTCCAACACTTTCCCCTGAGCATAGAGCTGAGAGGATGTTATCTCTCTTTGAATCTAAATGGCCCAAATCAAACGAGAGTTCGAAGCATCCAGTTCGAATCACTTTGCTTCGATGCTTCTGGAAGGAGTTAGCCTTCATTGCATTCCTTTCCATTGTTAGACTCTCTGTCATGTTTGTAGGACCGATTCTCATACAAAGTTTTATTGATTTCACTTCAGGGAAGAGAGGGTCTGTATATGAAGGGTACTACCTCGTGTTGATTCTCCTCGTTGCTAAATTCATAGAAGTCTTGTCCACTCACCATTACTACTTCAATGCTCAGAAGCTTGGGATGCTTATCCGAAGCAGTGTCATTCCTTCTTTGTACAAGAAGGGGTTAATGCTATCATGCTCTGCTCGGCAGGATCATGGAGTAGGGACCATTGTGAATTACATGGCTGTTGATACCCAACAACTCTCTGATATGATGATGCAGTTACATGCTCTGTGGTTAATGCCACTTCAACTTGGTATTGGCTTATTACTGCTTTACAATTGTTTAGGTGCCTCAGCAGTAACGGCGATCCTTGGACTTGTTGGTGTTCTTGTGTTTGTTGTGATTGCTACACGTAGAAACAACAGTTTCCAGTTGAATGTGATGAAGAACCGTGACTCGAGAATGAAAGCCGTGAATGAGATGCTTAATTACATGCGCGTGATCAAGTTTCAGGCTTGGGAAGAACATTTCAACGGGAAGATTATGGGTTTCCGTGAGTCAGAGTTCAGTTGGCTTTCCAAGTTGATGTTCTCAATTTGTGGCAATACTGTTGTGATGTGGAGCACACCATTATTGATATCAACTCTAACGTTTGGTACGGCTATTTTGCTGGGAGTTCCACTTGATGCAGCTACTGTCTTCACCGCAACAACTGTGTTCAAGATCTTGCAGGAACCTATTAGGGCATTCCCACAGGCTATGATATCTATTTCACAAGCAATGATATCACTGGAGAGGTTAGATAATTTCATGTTGAGCAGGGAATTGTCGAATGATTCGGTTGAGAGAGATGAAGGCTGTGGTGAACAAACAGCTGTGGAGATAAAAAATGGGACCTTTAGTTGGAATGATGATGACCTGCAACAGGACTTGAAAAATATTAATTTGAAGATAAAAAAGGGAGAGCTTACAGCAATTGTTGGTACTGTGGGGTCGGGAAAATCATCTCTCGTCGCATCAATTCTTGGTGAGATGAGCAAAATTTCTGGAAAGGTTCAGGTTTGTGGGAGTGTTGCTTATGTTTCACAAACATCTTGGATTCAGAATGGGACCATTGAAGAAAACATTCTGTTTGGTTTGCCGATGGACAGATATAAGTATAATGAAGTTATCAGGGTGTGTTCTTTGGAGAAAGATTTGGAAATGATGGATTATGGGGATCAGACAGAGATTGGTGAGCGTGGCATCAACCTAAGTGGAGGCCAGAAGCAGCGAATACAACTTGCGAGGGCTATATATCAAGACTGTGATATATATCTTCTTGACGATGTCTTCAGTGCTGTTGATGCTCACACTGGCTCTGAAATATTTAAGGAATGCGTGAGGGGAGCTCTAAAAGGCAAGACTATTATTCTTGTAACACACCAAGTAGATTTCCTACATAATGTAGATCTTATATTAGTGATGAGGGATGGCATGATAGTTCAATCAGGGAAGTACAATGATATACTAGATTCTGGAATGGATTTTAAAGCTCTGGTGGCTGCACATGAGACCTCTATGGAACTAGTAGAGCAGGGTGTGGTCCTACCCGGTGAAAATTTGAAAAAATCAAAGAAATCTCTAGAGGCTGGCATGAAAAGTAATGGTGAAAGCAATTCTCTTGACCAGCCCGAGCCTGGCATGAAAAGTTCTAAACTCATCAAAGAAGAGGAGAGAGAAACTGGCAAAGTGAGCTTACATGAGTATAAACTCTACTGCACTGAGGCTTTTGGATGGTGGGGCATTTCAGGAGTATTGCTTTTTTCTTTGTTATGGCAAGGGTCTATGATGGCAAGTGATTATTGGCTGGCATATGAAACCTCAGAAAAGCGTGCTGAAGTGTTTAACCCTTCTCAGTTTATTTCTATTTATGCAATTATTGCCTTTGTTTCGGTCATTTTGATTGTGATAAGATCCTACTCCTTTACATTATTGGGGCTAAAGACAGCACAAATTTTCTTTACACAAATTCTTCGTAGCATCTTGCATGCACCTATGTCTTTCTTTGACACGACACCATCTGGGAGAATTCTAAGTAGGGCATCCACCGATCAGGCTAATGTTGATGTCCTTCTCCCATTGTACATGGCATTTGTTATTGCCTTGTACATTACACTTCTCAGCATCTTCATCGTCACCTGTCAAAATTCTTGGCCAACAGCGTTCTTGATAATTCCTTTTGTTTGGTTGAGTATATGGTACCGGGGTTACTATCTTACTTCATCTCGTGAATTAACTCGACTGGATTCAATTACCAAAGCTCCTGTTATTCATCACTTCTCTGAAAGCATTGCAGGGGTCATGACAATCCGCGCGTTCAGAAAACAAAACAAATTTTGTGAAGAAAATCGCGAACGGGTGAATGCTAATTTGCGAATGGATTTCCACAACTACAGTTCCAATGAGTGGTTGGGATTTCGCTTAGAATTCCTTGGAAGCTTAATCTTGTGCATTTCTGCAATGTTCATGATCATCTTACCTAGCAGTATCATAAAGCCAGAAAATGTTGGTTTATCTCTCTCTTATGGGTTGTCCTTAAATGGCGTCTTGTTCTTGGTTGTATTCATGAGCTGTTACGTGGAAAACAAAATGATATCTGTTGAGAGGATAAAGCAGTTTACAAATATTCCATCGGAGCCAGCATGGAAAATTAAGGATCGTCTGCCTCCTTTAAATTGGCCAGGTCAAGGCAATGTAGATATCAAAGACTTGCAGGTCAGATATCGTCCAAACACTCCTCTGGTTCTTAAAGGCATTACTTTAAGCATTAATGGAGGAGAAAAGATTGGTGTTGTTGGTCGAACTGGGAGTGGAAAATCAACTTTAATTCAAGTGTTCTTTAGGCTGGTGGAACCTTCAGGAGGGAAAATAATAGTTGATAGTATTGACATATCCGTCTTAGGTCTTCATGATCTTAGATCTCGGTTTGGTATCATTCCTCAGGAGCCTGTCCTTTTTGAAGGAACTGTCAGAAGCAACATTGATCCTACTGGACAGTATACAGATGAAGAGATATGGAAGAGCTTGGAACGTTGTCAACTAAAAGATGCTGTGGTTTCTAAGCCTGAAAAGCTTGACTCTTTAGTGGTGGATAATGGAGAGAACTGGAGTGTGGGGCAGAGACAGTTGCTTTGTCTGGGGCGGGTTATGCTTAAGCGAAGCAAGCTCTTGTTTATGGATGAGGCAACTGCTTCTGTTGATTCTCAAACTGATGGTGTAATTCAAAAGATCATTAGAGAGGACTTTGCAGCCTGTACCATAATCAGCATTGCTCACAGAATACCAACAGTCATGGATTGTGATAGAGTTTTAGTCGTAGATGCAGGGCAAGCGAAAGAATTTGATAAGCCCTCCAACTTGCTTCAAGGGACATCTCTCTTTGGGGAATTAGTTCAAGAGTATGCCAACCGCTCCACCGGAATATAA 4530 0.4128 MSSESASWITSLSCTSPVKQISGDTFISTLPQWLRFIFLSPCPQRALLSTVDVLLLLIFFVFAVTKLFKRFTTNGGSHNDLNKPLIRNNRSSYLTTIWFKLTLTATVVLAILYTVASILVFSSCPKMPWMQVDGVFWLVQAITHAILAILIIHEKRFEAVAHPLWLRVYWIANFIFISFFTASGVIRLVYVDVDETKDFIFKVDDVVSFISFPLSLFLLFVAVKGSTGILSAAKTEPLIDEETKLYDDALSKSEVTGFASASIVSKAFWIWINPLLNKGYKSPLKIDEIPTLSPEHRAERMLSLFESKWPKSNESSKHPVRITLLRCFWKELAFIAFLSIVRLSVMFVGPILIQSFIDFTSGKRGSVYEGYYLVLILLVAKFIEVLSTHHYYFNAQKLGMLIRSSVIPSLYKKGLMLSCSARQDHGVGTIVNYMAVDTQQLSDMMMQLHALWLMPLQLGIGLLLLYNCLGASAVTAILGLVGVLVFVVIATRRNNSFQLNVMKNRDSRMKAVNEMLNYMRVIKFQAWEEHFNGKIMGFRESEFSWLSKLMFSICGNTVVMWSTPLLISTLTFGTAILLGVPLDAATVFTATTVFKILQEPIRAFPQAMISISQAMISLERLDNFMLSRELSNDSVERDEGCGEQTAVEIKNGTFSWNDDDLQQDLKNINLKIKKGELTAIVGTVGSGKSSLVASILGEMSKISGKVQVCGSVAYVSQTSWIQNGTIEENILFGLPMDRYKYNEVIRVCSLEKDLEMMDYGDQTEIGERGINLSGGQKQRIQLARAIYQDCDIYLLDDVFSAVDAHTGSEIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMRDGMIVQSGKYNDILDSGMDFKALVAAHETSMELVEQGVVLPGENLKKSKKSLEAGMKSNGESNSLDQPEPGMKSSKLIKEEERETGKVSLHEYKLYCTEAFGWWGISGVLLFSLLWQGSMMASDYWLAYETSEKRAEVFNPSQFISIYAIIAFVSVILIVIRSYSFTLLGLKTAQIFFTQILRSILHAPMSFFDTTPSGRILSRASTDQANVDVLLPLYMAFVIALYITLLSIFIVTCQNSWPTAFLIIPFVWLSIWYRGYYLTSSRELTRLDSITKAPVIHHFSESIAGVMTIRAFRKQNKFCEENRERVNANLRMDFHNYSSNEWLGFRLEFLGSLILCISAMFMIILPSSIIKPENVGLSLSYGLSLNGVLFLVVFMSCYVENKMISVERIKQFTNIPSEPAWKIKDRLPPLNWPGQGNVDIKDLQVRYRPNTPLVLKGITLSINGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGKIIVDSIDISVLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPTGQYTDEEIWKSLERCQLKDAVVSKPEKLDSLVVDNGENWSVGQRQLLCLGRVMLKRSKLLFMDEATASVDSQTDGVIQKIIREDFAACTIISIAHRIPTVMDCDRVLVVDAGQAKEFDKPSNLLQGTSLFGELVQEYANRSTGI 1509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2554g00054 1509 CDD ABC_6TM_ABCC_D2 950 1242 IPR044726 GO:0140359
Gabi2554g00054 1509 Gene3D - 1251 1499 IPR027417 -
Gabi2554g00054 1509 Gene3D ABC transporter type 1, transmembrane domain 915 1248 IPR036640 GO:0005524|GO:0016020
Gabi2554g00054 1509 Gene3D ABC transporter type 1, transmembrane domain 311 629 IPR036640 GO:0005524|GO:0016020
Gabi2554g00054 1509 CDD ABCC_MRP_domain2 1265 1485 - -
Gabi2554g00054 1509 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 259 1502 - -
Gabi2554g00054 1509 SUPERFAMILY ABC transporter transmembrane region 323 625 IPR036640 GO:0005524|GO:0016020
Gabi2554g00054 1509 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 952 1230 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi2554g00054 1509 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1267 1501 IPR003439 GO:0005524
Gabi2554g00054 1509 FunFam ABC transporter C family member 10 316 629 - -
Gabi2554g00054 1509 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 647 870 IPR003439 GO:0005524
Gabi2554g00054 1509 Pfam ABC transporter 1284 1432 IPR003439 GO:0005524
Gabi2554g00054 1509 CDD ABC_6TM_ABCC_D1 334 621 IPR044746 GO:0140359
Gabi2554g00054 1509 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 333 613 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi2554g00054 1509 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1260 1500 IPR027417 -
Gabi2554g00054 1509 Gene3D - 641 875 IPR027417 -
Gabi2554g00054 1509 MobiDBLite consensus disorder prediction 899 919 - -
Gabi2554g00054 1509 ProSitePatterns ABC transporters family signature. 772 786 IPR017871 GO:0005524|GO:0016887
Gabi2554g00054 1509 Pfam ABC transporter 665 798 IPR003439 GO:0005524
Gabi2554g00054 1509 SMART AAA_5 1293 1477 IPR003593 GO:0016887
Gabi2554g00054 1509 SMART AAA_5 674 855 IPR003593 GO:0016887
Gabi2554g00054 1509 FunFam ABC transporter C family member 4 630 888 - -
Gabi2554g00054 1509 Coils Coil 1138 1158 - -
Gabi2554g00054 1509 MobiDBLite consensus disorder prediction 899 914 - -
Gabi2554g00054 1509 FunFam ABC transporter C family member 5 914 1248 - -
Gabi2554g00054 1509 FunFam ABC transporter C family member 3 1250 1501 - -
Gabi2554g00054 1509 Pfam ABC transporter transmembrane region 980 1203 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi2554g00054 1509 Pfam ABC transporter transmembrane region 333 600 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi2554g00054 1509 SUPERFAMILY ABC transporter transmembrane region 947 1247 IPR036640 GO:0005524|GO:0016020
Gabi2554g00054 1509 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 645 868 IPR027417 -
Gabi2554g00054 1509 CDD ABCC_MRP_domain1 647 846 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2554g00054 Gabi-Chr2554 304933 311395 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2554g00054 631 1500 Calmodulin-binding Proteins AT2G36910 24.192 2.58e-60 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2554g00054 - K05666 gmx:100808752 2376.67