Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2554g00052 ATGAAGTTCTGCAAAAGATACCAGGAGTACATGCAAAGCCAGGATAAGAAGCTTCCTGTGGTTGGCTTCAAGAAGCTCAAGAAAATCTTGAAGAAGTGCAGAAGAGAATGTCAATCCCAGAAAAGCCTTCATGCACCCCTTGGCATCAAAACCTGCCCTGACCAATGCCCAGTGTGCGATGGGACCTTTTTCCCTTCCCTTCTCAATGAAATGTCAGCAATAGTTGGATGTTTTAATCAGCGTGCGCAGAAATTGCTGGAGCTACATCTCGCTTCTGGCTTCAGAAAGTACATTTTCTGGATCAAAGACAAATTACAAGGGAAACACACTGCATTGATTCAAGAAGGGAAAGATCTGGTTACTTATGCACTCATAAATTCCATTGCAATTAGAAAAATACTAAAGAAATATGATAAGATTCATTATTCCAAGCAAGGGCAGTTATTCAAGTCACAGATCCAGAGTATGCACAAGGAAATTCTTCAAAGTCCCTGGCTTTGTGAGCTTATGGCCTTCCACATCAATTTAAGGGAGACCAAGGTCAAGTCAAGGAAGGCACATGCTTTTTTTGATGGATGTTCCCTCACATTTAAGGATGGGAAACCATCACTTACTTGTGAGATCCTTGATTCTATCAACATTGATATTGACTTGACTTGTTCTATATGCTTGGACACAGTGTTTGATCCAGTTGCTCTGAGTTGCGGCCATATATTCTGCTATATTTGTGCTTGCTCGGCTGCATCAGTATCTATTGTTAATGGACTTAAGGCAGCAGATCCTAAAGAAAAATGTCCTTTATGTCGAGAGAGTGCAGTTCATCAAGGTGCTGTTCACTTGGAAGAACTAAATATTCTTTTAGGTCGAAGCTGTCAGGAATACTGGGAGCAAAGGCTTCAAGCAGAGAGGGCAGAAAGGGTTAAGCAAATAAAGGAACACTGGGAATCACAGTGCAGGGCATTTGTGGGCGTCTAA 975 0.4174 MKFCKRYQEYMQSQDKKLPVVGFKKLKKILKKCRRECQSQKSLHAPLGIKTCPDQCPVCDGTFFPSLLNEMSAIVGCFNQRAQKLLELHLASGFRKYIFWIKDKLQGKHTALIQEGKDLVTYALINSIAIRKILKKYDKIHYSKQGQLFKSQIQSMHKEILQSPWLCELMAFHINLRETKVKSRKAHAFFDGCSLTFKDGKPSLTCEILDSINIDIDLTCSICLDTVFDPVALSCGHIFCYICACSAASVSIVNGLKAADPKEKCPLCRESAVHQGAVHLEELNILLGRSCQEYWEQRLQAERAERVKQIKEHWESQCRAFVGV 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2554g00052 324 ProSiteProfiles Zinc finger RING-type profile. 220 269 IPR001841 -
Gabi2554g00052 324 SUPERFAMILY RING/U-box 212 272 - -
Gabi2554g00052 324 CDD SPX_BAH1-like 2 147 - -
Gabi2554g00052 324 Pfam Zinc finger, C3HC4 type (RING finger) 217 271 - -
Gabi2554g00052 324 SMART ring_2 220 268 IPR001841 -
Gabi2554g00052 324 ProSitePatterns Zinc finger RING-type signature. 235 244 IPR017907 -
Gabi2554g00052 324 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 206 322 IPR013083 -
Gabi2554g00052 324 CDD RING-HC_BAH1-like 210 283 - -
Gabi2554g00052 324 ProSiteProfiles SPX domain profile. 1 151 IPR004331 -
Gabi2554g00052 324 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 323 IPR033326 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2554g00052 Gabi-Chr2554 297780 300401 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2554g00052 217 269 C3H Transcription Factor Family AT4G28270 39.655 5.39e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2554g00052 K16275 - gmx:100787904 596.66