Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2554g00049 ATGAGTAGACGCGGGAGCAGAACTGTTTACGTTGGGAATCTTCCTGGTGATATCCGTGAAAGAGAAGTTGAAGATTTGTTTCTGAAGTATGGACACATAACTCACATTGATCTAAAGGTTCCGCCAAGGCCCCCTGGCTATGCATTTGTAGAGTTCGAAGATACTCAAGATGCTGAGGATGCAATTCGTGGGCGTGATGGATATGATTTTGATGGGCACCGGTTAAGGGTGGAGCCTGCACATGGTGGACGTGGTAATTCATCCTCAAGAGATCGTCATAGTAGTCACAGCAATGGCCGGGGTGGACGTGGGGTTTCTAGGCGCTCTGAATTTCGTGTTCTTATCACTGGATTGCCTTCTTCTGCATCCTGGCAGGATCTTAAAGATCACATGCGGAAGGCAGGGGATGTTTGCTTTTCCCAAGTTTTTCATGATGGAAGGGGAACTACTGGTATTGTGGATTATACCAGTTACGAGGATATGAAATATGCTATCAAGAAGCTTGATGACTCTGAGTTCCGGAATGCATTTTCTAAGGGCTTTGTTCGGGTGAGGGAATATGATTCGAGGCGGGACTCCTCTAGAAGTCCTAGTCGTGGCCGATCTCATTCTAGAGGAAGAAGCTATAGCCGCAGTCGTAGCCCTAGCCATAGTTACAGTCGGGGCCAGAGCCCAAGCAAATCTCCAAAGGGAAAATCTTCACAGCGTTTACCAGCTAAATCTCCACCAAGGCCAGCTTCTCGTTCTCGCTCAAGGTCTAGATCCCGTTCTTTATCAGGATCACGATCAAGGTCCAGGTCTCCATTACCTTTGCGTAATACAAGCCCAAAAAGGCGCAGTGCTAGCAGGAGCAGGAGCAAGAGTTTGTCTCGGTGA 876 0.4806 MSRRGSRTVYVGNLPGDIREREVEDLFLKYGHITHIDLKVPPRPPGYAFVEFEDTQDAEDAIRGRDGYDFDGHRLRVEPAHGGRGNSSSRDRHSSHSNGRGGRGVSRRSEFRVLITGLPSSASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTSYEDMKYAIKKLDDSEFRNAFSKGFVRVREYDSRRDSSRSPSRGRSHSRGRSYSRSRSPSHSYSRGQSPSKSPKGKSSQRLPAKSPPRPASRSRSRSRSRSLSGSRSRSRSPLPLRNTSPKRRSASRSRSKSLSR 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2554g00049 291 MobiDBLite consensus disorder prediction 186 291 - -
Gabi2554g00049 291 SMART rrm1_1 112 185 IPR000504 GO:0003723
Gabi2554g00049 291 SMART rrm1_1 8 78 IPR000504 GO:0003723
Gabi2554g00049 291 CDD RRM1_SF2_plant_like 8 78 - -
Gabi2554g00049 291 MobiDBLite consensus disorder prediction 211 235 - -
Gabi2554g00049 291 FunFam ASF/SF2-like pre-mRNA splicing factor SRP31 1 110 - -
Gabi2554g00049 291 CDD RRM2_SF2_plant_like 111 186 - -
Gabi2554g00049 291 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Gabi2554g00049 291 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 175 IPR000504 GO:0003723
Gabi2554g00049 291 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Gabi2554g00049 291 MobiDBLite consensus disorder prediction 63 107 - -
Gabi2554g00049 291 Gene3D - 2 110 IPR012677 -
Gabi2554g00049 291 Gene3D - 111 188 IPR012677 -
Gabi2554g00049 291 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 6 266 - -
Gabi2554g00049 291 SUPERFAMILY RNA-binding domain, RBD 6 175 IPR035979 GO:0003676
Gabi2554g00049 291 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 189 IPR000504 GO:0003723
Gabi2554g00049 291 FunFam serine/arginine-rich splicing factor SR34A-like 111 188 - -
Gabi2554g00049 291 MobiDBLite consensus disorder prediction 260 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2554g00049 Gabi-Chr2554 271908 276661 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2554g00049 2 195 Eukaryotic Initiation Factors Gene Family AT4G34110 26.108 2.23e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2554g00049 K12890 - gmx:100796900 331.257