Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2554g00040 ATGTCTGAAGTGAATGCGGACGCTGAAACCCCTAAAAGCTCAACCATCTACATCAACAACCTTAACGAAAAGATTAAGATTGAGGAGTTGAAGAAGTCTTTAAACGCTGTTTTCAGTCAGTTCGGGAAGATACTGGAGGTGTTAGCTTTCAAGACCCTGAAGCACAAGGGTCAAGCTTGGGTGGTATTTGAGGATGTCTATTCTGCTTCCAATGCCCTCAGGCAAATGCAAGGTTTCCCCTTCTATGATAAGCCCATGAGAATACAGTATGCAAAGACTAAATCTGATATAATAGCAAAAGCTGATGGTACTTTTGTTCCTAGGGAAAAACGTAAGAGGCATGATGACAAAGGCAAAAAACGGAAGGACCAACATGATGCTAATTTAGCTGGAATGGGCCTAAATCCAGCTTATCCTGGTGCTTATGGGGCAACACCTGCTCTATCCCAGATACCTTATCCAGGTGGTGCGAAATCTATGGTACCTGAGGCTCCTGCTCCACCAAATAATATTCTCTTTATTCAGAATCTTCCCAATGAGACAACTCCCATGATGCTGCAAATGCTCTTCCTTCAATATCCTGGTTTCAAGGAAGTTAGAATGGTTGAAACAAAACCAGGAATTGCCTTTGTGGAGTATGGAGATGAGATGCAATCCACAGTGGCTATGCAGGCGCTACAGGGTTTCAAGATAACCCCGCAAAACCCTATGTTGATAACTTATGCCAAGAAATAG 735 0.4299 MSEVNADAETPKSSTIYINNLNEKIKIEELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFEDVYSASNALRQMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPREKRKRHDDKGKKRKDQHDANLAGMGLNPAYPGAYGATPALSQIPYPGGAKSMVPEAPAPPNNILFIQNLPNETTPMMLQMLFLQYPGFKEVRMVETKPGIAFVEYGDEMQSTVAMQALQGFKITPQNPMLITYAKK 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2554g00040 244 Gene3D - 7 113 IPR012677 -
Gabi2554g00040 244 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 14 93 IPR000504 GO:0003723
Gabi2554g00040 244 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 16 86 IPR000504 GO:0003723
Gabi2554g00040 244 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 172 231 IPR000504 GO:0003723
Gabi2554g00040 244 CDD RRM1_U1A_like 15 92 - -
Gabi2554g00040 244 SUPERFAMILY RNA-binding domain, RBD 12 233 IPR035979 GO:0003676
Gabi2554g00040 244 SMART rrm1_1 15 89 IPR000504 GO:0003723
Gabi2554g00040 244 SMART rrm1_1 171 240 IPR000504 GO:0003723
Gabi2554g00040 244 FunFam U1 small nuclear ribonucleoprotein A 8 113 - -
Gabi2554g00040 244 Gene3D - 158 244 IPR012677 -
Gabi2554g00040 244 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 11 93 - -
Gabi2554g00040 244 MobiDBLite consensus disorder prediction 103 129 - -
Gabi2554g00040 244 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 170 244 IPR000504 GO:0003723
Gabi2554g00040 244 CDD RRM2_U1A_like 168 240 - -
Gabi2554g00040 244 FunFam U2 small nuclear ribonucleoprotein B'' 161 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2554g00040 Gabi-Chr2554 214195 217870 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2554g00040 3 96 Eukaryotic Initiation Factors Gene Family AT4G34110 30.208 4.47e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2554g00040 K11091 - gmx:100500002 414.075