Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2554g00034 ATGATGGAACCTGACATCGAAGCAAAGTATGTCCACAATGGCAAGGTCATGGTGGGCACTGCCATCCTTCTCATCATTATCATACTCATCATCATTTTCTTTCACACCTACGTCCACCTCTGTCGCCGCCACCATCTCTTCTCTCAACCACTTACCACTAATTCCCCTTCCACCACCACTTTAAATGAAGAAAGCCTCGACCCTTCTGTTCTGAAATCTCTTCCTACCTTCACTTACTCCTCCGCCACCCACCGCCCTCTGCACGACTGCGCCGTCTGCTTGTCGGAATTCGCTGACTGCGATAAAGGCCGTGTGCTTCCAAACTGTAACCACGCTTTCCACTCTCATTGTATTGACACATGGTTCTGCTCTCACTCCAACTGTCCTCTCTGCCGAGCTCCGGTCGAACCGGATACAGTGGCCGTTGATGTTGAACCGTGCTCTGTTTCGGTTTCAGAAGCGGGTGAGGGTTGCTCGTCTTTTCCTGCTCCAATTGGGTGTCCGAGAAAGCCATTAGGTATAATAGTTGAGATGCCCGAGGAGGAAAGAGGGTCGGATCCTGTAGCGGGAGATCACGGGTTCAAATGGCCATTGAAAAGGTTTTGCAGTGTATAG 615 0.5057 MMEPDIEAKYVHNGKVMVGTAILLIIIILIIIFFHTYVHLCRRHHLFSQPLTTNSPSTTTLNEESLDPSVLKSLPTFTYSSATHRPLHDCAVCLSEFADCDKGRVLPNCNHAFHSHCIDTWFCSHSNCPLCRAPVEPDTVAVDVEPCSVSVSEAGEGCSSFPAPIGCPRKPLGIIVEMPEEERGSDPVAGDHGFKWPLKRFCSV 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2554g00034 204 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 18 154 - -
Gabi2554g00034 204 SMART ring_2 90 131 IPR001841 -
Gabi2554g00034 204 ProSiteProfiles Zinc finger RING-type profile. 90 132 IPR001841 -
Gabi2554g00034 204 SUPERFAMILY RING/U-box 70 139 - -
Gabi2554g00034 204 Pfam RING-like zinc finger 89 118 IPR001841 -
Gabi2554g00034 204 FunFam E3 ubiquitin-protein ligase ATL6 54 138 - -
Gabi2554g00034 204 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 53 138 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2554g00034 Gabi-Chr2554 164125 164847 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2554g00034 10 203 Rapid Response to Elicitors AT3G16720 33.193 1.45e-33 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2554g00034 - - gmx:100800433 296.589